Backbone fold of Human Small Ubiquitin like Modifier protein-1 (SUMO-1) based on Prot3D-NMR approach.
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 0.8-1 mM [U-100% 13C; U-100% 15N] sodium phosphate-1 | 90% H2O/10% D2O | 20 | 6.5 | ambient | 298 | |
| 2 | 3D 1H-15N TOCSY | 0.8-1 mM [U-100% 13C; U-100% 15N] sodium phosphate-1 | 90% H2O/10% D2O | 20 | 6.5 | ambient | 298 | |
| 3 | 3D HNCO | 0.8-1 mM [U-100% 13C; U-100% 15N] sodium phosphate-1 | 90% H2O/10% D2O | 20 | 6.5 | ambient | 298 | |
| 4 | 3D HNCA | 0.8-1 mM [U-100% 13C; U-100% 15N] sodium phosphate-1 | 90% H2O/10% D2O | 20 | 6.5 | ambient | 298 | |
| 5 | 3D H(CCO)NH | 0.8-1 mM [U-100% 13C; U-100% 15N] sodium phosphate-1 | 90% H2O/10% D2O | 20 | 6.5 | ambient | 298 | |
| 6 | 3D 1H-13C NOESY | 0.8-1 mM [U-100% 13C; U-100% 15N] sodium phosphate-1 | 90% H2O/10% D2O | 20 | 6.5 | ambient | 298 | |
| 7 | 3D 1H-15N NOESY | 0.8-1 mM [U-100% 13C; U-100% 15N] sodium phosphate-1 | 90% H2O/10% D2O | 20 | 6.5 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| distance geometry | CARA | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | chemical shift assignment | CARA | 9.8 | Keller and Wuthrich |
| 2 | refinement | CYANA | ||
