☰ Navigation Tabs
Haddock model of Bacillus subtilis L,D-transpeptidase in complex with a peptidoglycan hexamuropeptide
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 13C-13C DARR 2.5 mg/mL [U-13C; U-15N; U-2H] protein, 3 mg/mL peptide, 50 mM HEPES 0.05 7.2 ambient 298 2 hCANH 2.5 mg/mL [U-13C; U-15N; U-2H] protein, 3 mg/mL peptide, 50 mM HEPES 0.05 7.2 ambient 298 3 hNH 2.5 mg/mL [U-13C; U-15N; U-2H] protein, 3 mg/mL peptide, 50 mM HEPES 0.05 7.2 ambient 298 4 3D HNCA 376 uM [U-99% 13C; U-99% 15N] protein, 50 mM HEPES 0.05 7.2 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Agilent vnmrs 600 2 Bruker AVANCE III 1000
NMR Refinement Method Details Software simulated annealing HADDOCK STARTING STRUCTURE FOR CHAIN A IS PDB ENTRY 3ZQD. THE PEPTIDOGLYCAN LIGAND STARTING STRUCTURE WAS GENERATED BY CNS. HADDOCK
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 200 Conformers Submitted Total Number 5 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution HADDOCK 2.1 Alexandre Bonvin 2 refinement HADDOCK 2.1 Alexandre Bonvin