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NMR structure of UBA domain of DNA-damage-inducible 1 protein (Ddi1)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-100% 15N] UBA, 7 % [U-99% 2H] D2O, 93 % H2O, 20 mM sodium phosphate 93% H2O/7% D2O 10 6.8 ambient atm 298.2 2 2D 1H-1H TOCSY 1 mM [U-100% 15N] UBA, 7 % [U-99% 2H] D2O, 93 % H2O, 20 mM sodium phosphate 93% H2O/7% D2O 10 6.8 ambient atm 298.2 3 2D 1H-1H NOESY 1 mM [U-100% 15N] UBA, 7 % [U-99% 2H] D2O, 93 % H2O, 20 mM sodium phosphate 93% H2O/7% D2O 10 6.8 ambient atm 298.2 4 3D 1H-15N NOESY 1 mM [U-100% 15N] UBA, 7 % [U-99% 2H] D2O, 93 % H2O, 20 mM sodium phosphate 93% H2O/7% D2O 10 6.8 ambient atm 298.2 5 3D 1H-15N TOCSY 1 mM [U-100% 15N] UBA, 7 % [U-99% 2H] D2O, 93 % H2O, 20 mM sodium phosphate 93% H2O/7% D2O 10 6.8 ambient atm 298.2 6 RDC 0.5 mM [U-100% 15N] UBA, 7 % [U-99% 2H] D2O, 43 % H2O, 10 mM sodium phosphate, 5 % C12E5, 45 % n-hexanol 93% H2O/7% D2O 10 6.8 ambient atm 298.2 7 RDC 0.5 mM [U-100% 15N] UBA, 7 % [U-99% 2H] D2O, 43 % H2O, 10 mM sodium phosphate, 5 % C12E5, 45 % n-hexanol 93% H2O/7% D2O 10 6.8 ambient atm 308.2
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software simulated annealing CARA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 10 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 peak picking CARA 1.8.1 Keller and Wuthrich 2 chemical shift assignment CARA 1.8.1 Keller and Wuthrich 3 collection TopSpin 2.1 Bruker Biospin 4 processing TopSpin 2.1 Bruker Biospin 5 data analysis TopSpin 2.1 Bruker Biospin 6 chemical shift calculation ARIA 2.1 Linge, O'Donoghue and Nilges 7 structure solution ARIA 2.1 Linge, O'Donoghue and Nilges 8 refinement ARIA 2.1 Linge, O'Donoghue and Nilges