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WW3 domain of Nedd4L in complex with its HECT domain PY motif
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 0.7 mM WW3-1, 1.4 mM HECT_PY-2, 150 mM sodium chloride-3, 20 mM sodium phosphate-4 90% H2O/10% D2O 7 ambient 298 2 2D 1H-1H TOCSY 0.7 mM WW3-1, 1.4 mM HECT_PY-2, 150 mM sodium chloride-3, 20 mM sodium phosphate-4 90% H2O/10% D2O 7 ambient 298 3 3D 1H-15N NOESY 1 mM [U-100% 15N] WW3-5, 2 mM HECT_PY-6, 150 mM sodium chloride-7, 20 mM sodium phosphate-8 90% H2O/10% D2O 7 ambient 298 4 3D 1H-15N TOCSY 1 mM [U-100% 15N] WW3-5, 2 mM HECT_PY-6, 150 mM sodium chloride-7, 20 mM sodium phosphate-8 90% H2O/10% D2O 7 ambient 298 5 3D HNCACB 0.8 mM [U-100% 13C; U-100% 15N] WW3-9, 1.6 mM HECT_PY-10, 150 mM sodium chloride-11, 20 mM sodium phosphate-12 90% H2O/10% D2O 7 ambient 298 6 3D CBCA(CO)NH 0.8 mM [U-100% 13C; U-100% 15N] WW3-9, 1.6 mM HECT_PY-10, 150 mM sodium chloride-11, 20 mM sodium phosphate-12 90% H2O/10% D2O 7 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing CNSSOLVE
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 300 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNSSOLVE Brunger, Adams, Clore, Gros, Nilges and Read 2 structure solution CNSSOLVE Brunger, Adams, Clore, Gros, Nilges and Read 3 chemical shift assignment CARA Keller and Wuthrich 4 peak picking CARA Keller and Wuthrich 5 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 6 collection TopSpin Bruker Biospin 7 geometry optimization TALOS Cornilescu, Delaglio and Bax