2MKC | pdb_00002mkc

Cooperative Structure of the Heterotrimeric pre-mRNA Retention and Splicing Complex


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
22D 1H-15N HSQC25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
32D 1H-15N HSQC25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
42D 1H-15N HSQC25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
52D 1H-15N HSQC25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p90% H2O/10% D2O6.8ambient308
62D 1H-15N HSQC25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p90% H2O/10% D2O6.8ambient308
72D 1H-15N HSQC25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p90% H2O/10% D2O6.8ambient308
82D 1H-15N HSQC25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p90% H2O/10% D2O6.8ambient308
92D 1H-15N HSQC25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
102D 1H-15N HSQC25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
112D 1H-15N HSQC25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
122D 1H-15N HSQC25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
133D HNCO25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
143D HNCA25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
153D HNCA25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p90% H2O/10% D2O6.8ambient308
163D HNCA25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
173D HNCACB25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N; U-2H] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
183D HN(CO)CA25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
193D HN(CO)CA25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p90% H2O/10% D2O6.8ambient308
203D HN(CO)CA25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
213D HCCH-TOCSY25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
223D HCCH-TOCSY25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p90% H2O/10% D2O6.8ambient308
233D HCCH-TOCSY25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
243D 1H-15N NOESY25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
253D 1H-15N NOESY25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p90% H2O/10% D2O6.8ambient308
263D 1H-15N NOESY25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
273D 1H-15N NOESY25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM [U-13C; U-15N; U-2H] Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
283D 1H-13C NOESY aliphatic25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
293D 1H-13C NOESY aliphatic25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p90% H2O/10% D2O6.8ambient308
303D 1H-13C NOESY aliphatic25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
313D 1H-13C NOESY aliphatic25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM [U-13C; U-15N; U-2H] Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
323D 1H-13C NOESY aromatic25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
333D 1H-13C NOESY aromatic25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p90% H2O/10% D2O6.8ambient308
343D 1H-13C NOESY aromatic25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
353D HCCH-TOCSY25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM [U-13C; U-15N; U-2H] Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
363D 1H-13C NOESY filtered/edited25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
373D 1H-13C NOESY filtered/edited25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p90% H2O/10% D2O6.8ambient308
38HBCBCGCDHD25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
393D CCH-TOCSY25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
403D CBCA(CO)NH25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
413D 1H-15N NOESY ARG-centered25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p90% H2O/10% D2O6.8ambient308
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE900
2BrukerAVANCE800
3BrukerAVANCE700
4BrukerAVANCE600
5BrukerAVANCE800
NMR Refinement
MethodDetailsSoftware
simulated annealingWATER REFINEMENT (RECOORD)CYANA
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number500
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCYANA3.0Guntert, Mumenthaler and Wuthrich
2refinementCNS1.2Brunger, Adams, Clore, Gros, Nilges and Read
3processingTopSpin3.1Bruker Biospin
4processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5data analysisAnalysis_CCPNCCPN