2MK5

Solution structure of a protein domain

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1.1 mM [U-13C; U-15N] entity-1, 40 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.02 % DSS-4	90% H2O/10% D2O	100	6.5	ambient	298
2	2D 1H-13C HSQC	1.1 mM [U-13C; U-15N] entity-1, 40 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.02 % DSS-4	90% H2O/10% D2O	100	6.5	ambient	298
3	3D CBCA(CO)NH	1.1 mM [U-13C; U-15N] entity-1, 40 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.02 % DSS-4	90% H2O/10% D2O	100	6.5	ambient	298
4	3D HNCACB	1.1 mM [U-13C; U-15N] entity-1, 40 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.02 % DSS-4	90% H2O/10% D2O	100	6.5	ambient	298
5	3D HNCO	1.1 mM [U-13C; U-15N] entity-1, 40 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.02 % DSS-4	90% H2O/10% D2O	100	6.5	ambient	298
6	3D HN(CA)CO	1.1 mM [U-13C; U-15N] entity-1, 40 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.02 % DSS-4	90% H2O/10% D2O	100	6.5	ambient	298
7	3D HBHA(CO)NH	1.1 mM [U-13C; U-15N] entity-1, 40 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.02 % DSS-4	90% H2O/10% D2O	100	6.5	ambient	298
8	3D HCCH-TOCSY	1.1 mM [U-13C; U-15N] entity-1, 40 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.02 % DSS-4	90% H2O/10% D2O	100	6.5	ambient	298
9	3D CCH-TOCSY	1.1 mM [U-13C; U-15N] entity-1, 40 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.02 % DSS-4	90% H2O/10% D2O	100	6.5	ambient	298
10	3D 1H-15N NOESY	1.1 mM [U-13C; U-15N] entity-1, 40 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.02 % DSS-4	90% H2O/10% D2O	100	6.5	ambient	298
11	3D 1H-13C NOESY aliphatic	1.1 mM [U-13C; U-15N] entity-1, 40 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.02 % DSS-4	90% H2O/10% D2O	100	6.5	ambient	298
12	3D 1H-13C NOESY aromatic	1.1 mM [U-13C; U-15N] entity-1, 40 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.02 % DSS-4	90% H2O/10% D2O	100	6.5	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Agilent	DD2	600

NMR Refinement
Method	Details	Software
molecular dynamics, simulated annealing		VnmrJ

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	VnmrJ		Varian
2	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	chemical shift assignment	NMRView		Johnson, One Moon Scientific
4	peak picking	NMRView		Johnson, One Moon Scientific
5	data analysis	NMRView		Johnson, One Moon Scientific
6	structure solution	CYANA		Guntert, Mumenthaler and Wuthrich
7	structure solution	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
8	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read