2MHE
NMR structure of the protein NP_419126.1 from Caulobacter crescentus
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 1.2 mM [U-99% 13C; U-99% 15N] protein | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 | |
2 | 4D HACANH APSY | 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 1.2 mM [U-99% 13C; U-99% 15N] protein | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 | |
3 | 5D HACACONH APSY | 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 1.2 mM [U-99% 13C; U-99% 15N] protein | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 | |
4 | 5D CBCACONH APSY | 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 1.2 mM [U-99% 13C; U-99% 15N] protein | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 | |
5 | 3D 1H-15N NOESY | 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 1.2 mM [U-99% 13C; U-99% 15N] protein | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 | |
6 | 3D 1H-13C NOESY aliphatic | 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 1.2 mM [U-99% 13C; U-99% 15N] protein | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 | |
7 | 3D 1H-13C NOESY aromatic | 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 1.2 mM [U-99% 13C; U-99% 15N] protein | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 80 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | Brunger A. T. et.al. | |
2 | chemical shift assignment | CNS | Brunger A. T. et.al. | |
3 | data analysis | CNS | Brunger A. T. et.al. | |
4 | refinement | CARA | Keller and Wuthrich | |
5 | chemical shift assignment | CARA | Keller and Wuthrich | |
6 | data analysis | CARA | Keller and Wuthrich | |
7 | chemical shift assignment | j-UNIO | Herrmann and Wuthrich | |
8 | chemical shift calculation | j-UNIO | Herrmann and Wuthrich | |
9 | peak picking | j-UNIO | Herrmann and Wuthrich | |
10 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
11 | collection | TopSpin | Bruker Biospin | |
12 | processing | TopSpin | Bruker Biospin |