2MAF | pdb_00002maf

Solution structure of opa60 from n. gonorrhoeae

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	800 uM [U-100% 13C; U-100% 15N; U-80% 2H] OPA60, 150 mM Dodecyl Phosphcholine, 20 mM sodium phosphate, 150 mM sodium chloride	90% H2O/10% D2O		6.2	ambient	313
2	3D HN(COCA)CB	800 uM [U-100% 13C; U-100% 15N; U-80% 2H] OPA60, 150 mM Dodecyl Phosphcholine, 20 mM sodium phosphate, 150 mM sodium chloride	90% H2O/10% D2O		6.2	ambient	313
3	3D HNCACB	800 uM [U-100% 13C; U-100% 15N; U-80% 2H] OPA60, 150 mM Dodecyl Phosphcholine, 20 mM sodium phosphate, 150 mM sodium chloride	90% H2O/10% D2O		6.2	ambient	313
4	3D HNCO	800 uM [U-100% 13C; U-100% 15N; U-80% 2H] OPA60, 150 mM Dodecyl Phosphcholine, 20 mM sodium phosphate, 150 mM sodium chloride	90% H2O/10% D2O		6.2	ambient	313
5	3D HNCA	800 uM [U-100% 13C; U-100% 15N; U-80% 2H] OPA60, 150 mM Dodecyl Phosphcholine, 20 mM sodium phosphate, 150 mM sodium chloride	90% H2O/10% D2O		6.2	ambient	313
6	3D 1H-15N NOESY	800 uM [U-100% 13C; U-100% 15N; U-80% 2H] OPA60, 150 mM Dodecyl Phosphcholine, 20 mM sodium phosphate, 150 mM sodium chloride	90% H2O/10% D2O		6.2	ambient	313
7	3D HN(CO)CA	800 uM [U-100% 13C; U-100% 15N; U-80% 2H] OPA60, 150 mM Dodecyl Phosphcholine, 20 mM sodium phosphate, 150 mM sodium chloride	90% H2O/10% D2O		6.2	ambient	313
8	3D HN(CA)CO	800 uM [U-100% 13C; U-100% 15N; U-80% 2H] OPA60, 150 mM Dodecyl Phosphcholine, 20 mM sodium phosphate, 150 mM sodium chloride	90% H2O/10% D2O		6.2	ambient	313

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
molecular dynamics	20 lowest energy structures from simulated annealing experiment embedded in lipid bilayer with MD experiment of 100 ns.	X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	400
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	X-PLOR NIH	2.31	Schwieters, Kuszewski, Tjandra and Clore
2	chemical shift assignment	CARA	1.8.4.2	Keller and Wuthrich
3	refinement	GROMACS	4.5	Lindahl
4	data analysis	NMRPipe	7.9	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5	collection	TopSpin	3.0	Bruker Biospin