2M8P

The structure of the W184AM185A mutant of the HIV-1 capsid protein


SOLUTION NMR - SOLUTION SCATTERING
Solution Scattering Data Acquistion1
Scattering Typex-ray
Radiation/Neutron SourceAPS
Synchrotronsynchrotron
Beamline Type12-ID-B
Detector Typemosaic Gold CCD
Detector Manufacturer Details
Temperature (K)298
pH6.5
Numer of Time Frames Used
Protein Concentration Range (mg/mL)0.63 - 5.0
Sample Buffer
Data Reduction Software
Guiner Mean Radius Of Gyration (nm)
Sigma Mean Radius Of Gyration
R(XS-1) Mean Cross Sectional Radii (nm)
R(XS-1) Sigma Mean Cross Sectional Radii
R(XS-2) Mean Cross Sectional Radii (nm)
R(XS-2) Sigma Mean Cross Sectional Radii
P(R) Protein Length (nm)
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5 mM [U-13C; U-15N; U-2H] entity, 1 mM EDTA, 50 mM sodium chloride, 1 mM DTT, 20 mM sodium phosphate95% H2O/5% D2O6.5ambient308
22D 1H-13C HSQC0.5 mM [U-13C; U-15N; U-2H] entity, 1 mM EDTA, 50 mM sodium chloride, 1 mM DTT, 20 mM sodium phosphate95% H2O/5% D2O6.5ambient308
32D 1H-13C HSQC aliphatic0.5 mM [U-13C; U-15N; U-2H] entity, 1 mM EDTA, 50 mM sodium chloride, 1 mM DTT, 20 mM sodium phosphate95% H2O/5% D2O6.5ambient308
42D 1H-13C HSQC aromatic0.5 mM [U-13C; U-15N; U-2H] entity, 1 mM EDTA, 50 mM sodium chloride, 1 mM DTT, 20 mM sodium phosphate95% H2O/5% D2O6.5ambient308
53D HNCO0.5 mM [U-13C; U-15N; U-2H] entity, 1 mM EDTA, 50 mM sodium chloride, 1 mM DTT, 20 mM sodium phosphate95% H2O/5% D2O6.5ambient308
63D HNCACB0.5 mM [U-13C; U-15N; U-2H] entity, 1 mM EDTA, 50 mM sodium chloride, 1 mM DTT, 20 mM sodium phosphate95% H2O/5% D2O6.5ambient308
73D HNCA0.5 mM [U-13C; U-15N; U-2H] entity, 1 mM EDTA, 50 mM sodium chloride, 1 mM DTT, 20 mM sodium phosphate95% H2O/5% D2O6.5ambient308
83D HN(CO)CA0.5 mM [U-13C; U-15N; U-2H] entity, 1 mM EDTA, 50 mM sodium chloride, 1 mM DTT, 20 mM sodium phosphate95% H2O/5% D2O6.5ambient308
93D 1H-15N NOESY0.5 mM [U-13C; U-15N; U-2H] entity, 1 mM EDTA, 50 mM sodium chloride, 1 mM DTT, 20 mM sodium phosphate95% H2O/5% D2O6.5ambient308
102D TROSY-Artsy0.5 mM [U-13C; U-15N; U-2H] entity, 1 mM EDTA, 50 mM sodium chloride, 1 mM DTT, 20 mM sodium phosphate95% H2O/5% D2O6.5ambient308
112D 1H-15N R10.5 mM [U-13C; U-15N; U-2H] entity, 1 mM EDTA, 50 mM sodium chloride, 1 mM DTT, 20 mM sodium phosphate95% H2O/5% D2O6.5ambient308
122D 1H-15N R10.5 mM [U-13C; U-15N; U-2H] entity, 1 mM EDTA, 50 mM sodium chloride, 1 mM DTT, 20 mM sodium phosphate95% H2O/5% D2O6.5ambient308
132D 1H-15N R1r0.5 mM [U-13C; U-15N; U-2H] entity, 1 mM EDTA, 50 mM sodium chloride, 1 mM DTT, 20 mM sodium phosphate95% H2O/5% D2O6.5ambient308
142D 1H-15N R1r0.5 mM [U-13C; U-15N; U-2H] entity, 1 mM EDTA, 50 mM sodium chloride, 1 mM DTT, 20 mM sodium phosphate95% H2O/5% D2O6.5ambient308
152D 1H-15N HetNOE0.5 mM [U-13C; U-15N; U-2H] entity, 1 mM EDTA, 50 mM sodium chloride, 1 mM DTT, 20 mM sodium phosphate95% H2O/5% D2O6.5ambient308
162D 1H-15N HetNOE0.5 mM [U-13C; U-15N; U-2H] entity, 1 mM EDTA, 50 mM sodium chloride, 1 mM DTT, 20 mM sodium phosphate95% H2O/5% D2O6.5ambient308
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance800
2BrukerAvance500
NMR Refinement
MethodDetailsSoftware
simulated annealingThis is an ensemble refinement. The MODEL entries appear in groups of 5, representing 20 ensembles. Xplor-NIH Ensemble Calculation This file contains 20 ensembles of size 5 Ensemble 1: MODEL 1, weight: 0.379 MODEL 2, weight: 0.272 MODEL 3, weight: 0.185 MODEL 4, weight: 0.114 MODEL 5, weight: 0.050 Ensemble 2: MODEL 6, weight: 0.355 MODEL 7, weight: 0.267 MODEL 8, weight: 0.191 MODEL 9, weight: 0.126 MODEL 10, weight: 0.062 Ensemble 3: MODEL 11, weight: 0.347 MODEL 12, weight: 0.265 MODEL 13, weight: 0.193 MODEL 14, weight: 0.130 MODEL 15, weight: 0.066 Ensemble 4: MODEL 16, weight: 0.207 MODEL 17, weight: 0.205 MODEL 18, weight: 0.201 MODEL 19, weight: 0.197 MODEL 20, weight: 0.190 Ensemble 5: MODEL 21, weight: 0.221 MODEL 22, weight: 0.212 MODEL 23, weight: 0.203 MODEL 24, weight: 0.191 MODEL 25, weight: 0.173 Ensemble 6: MODEL 26, weight: 0.364 MODEL 27, weight: 0.269 MODEL 28, weight: 0.189 MODEL 29, weight: 0.121 MODEL 30, weight: 0.057 Ensemble 7: MODEL 31, weight: 0.220 MODEL 32, weight: 0.212 MODEL 33, weight: 0.203 MODEL 34, weight: 0.191 MODEL 35, weight: 0.173 Ensemble 8: MODEL 36, weight: 0.366 MODEL 37, weight: 0.269 MODEL 38, weight: 0.188 MODEL 39, weight: 0.120 MODEL 40, weight: 0.056 Ensemble 9: MODEL 41, weight: 0.219 MODEL 42, weight: 0.212 MODEL 43, weight: 0.203 MODEL 44, weight: 0.192 MODEL 45, weight: 0.174 Ensemble 10: MODEL 46, weight: 0.264 MODEL 47, weight: 0.234 MODEL 48, weight: 0.204 MODEL 49, weight: 0.172 MODEL 50, weight: 0.127 Ensemble 11: MODEL 51, weight: 0.233 MODEL 52, weight: 0.219 MODEL 53, weight: 0.204 MODEL 54, weight: 0.186 MODEL 55, weight: 0.159 Ensemble 12: MODEL 56, weight: 0.218 MODEL 57, weight: 0.211 MODEL 58, weight: 0.203 MODEL 59, weight: 0.192 MODEL 60, weight: 0.175 Ensemble 13: MODEL 61, weight: 0.096 MODEL 62, weight: 0.122 MODEL 63, weight: 0.159 MODEL 64, weight: 0.221 MODEL 65, weight: 0.403 Ensemble 14: MODEL 66, weight: 0.333 MODEL 67, weight: 0.260 MODEL 68, weight: 0.196 MODEL 69, weight: 0.137 MODEL 70, weight: 0.074 Ensemble 15: MODEL 71, weight: 0.083 MODEL 72, weight: 0.109 MODEL 73, weight: 0.149 MODEL 74, weight: 0.218 MODEL 75, weight: 0.442 Ensemble 16: MODEL 76, weight: 0.256 MODEL 77, weight: 0.231 MODEL 78, weight: 0.204 MODEL 79, weight: 0.175 MODEL 80, weight: 0.134 Ensemble 17: MODEL 81, weight: 0.298 MODEL 82, weight: 0.248 MODEL 83, weight: 0.201 MODEL 84, weight: 0.154 MODEL 85, weight: 0.098 Ensemble 18: MODEL 86, weight: 0.223 MODEL 87, weight: 0.214 MODEL 88, weight: 0.203 MODEL 89, weight: 0.190 MODEL 90, weight: 0.170 Ensemble 19: MODEL 91, weight: 0.097 MODEL 92, weight: 0.122 MODEL 93, weight: 0.159 MODEL 94, weight: 0.221 MODEL 95, weight: 0.401 Ensemble 20: MODEL 96, weight: 0.334 MODEL 97, weight: 0.261 MODEL 98, weight: 0.196 MODEL 99, weight: 0.136 MODEL 100, weight: 0.073X-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number480
Conformers Submitted Total Number100
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementX-PLOR NIH2.32Schwieters, Kuszewski, Tjandra and Clore
2collectionTopSpin1.3Bruker Biospin
3data analysisCCPN-Analysis2.2.2(CCPN-Analysis)-Vranken, Boucher, Stevens..Laue.