2M8B
Solution structure of AhPDF1 from Arabidopsis halleri
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H COSY | 1.3 mM AhPDF1 | 90% H2O/10% D2O | 0 | 4.5 | ambient | 298 | |
2 | 2D 1H-1H TOCSY | 1.3 mM AhPDF1 | 90% H2O/10% D2O | 0 | 4.5 | ambient | 298 | |
3 | 2D 1H-1H NOESY | 1.3 mM AhPDF1 | 90% H2O/10% D2O | 0 | 4.5 | ambient | 298 | |
4 | 2D 1H-15N HSQC | 1.3 mM AhPDF1 | 90% H2O/10% D2O | 0 | 4.5 | ambient | 298 | |
5 | 2D 1H-13C HSQC | 1.3 mM AhPDF1 | 90% H2O/10% D2O | 0 | 4.5 | ambient | 298 | |
6 | 2D 1H-1H TOCSY | 1.3 mM AhPDF1 | 100% D2O | 0 | 4.5 | ambient | 298 | |
7 | 2D 1H-1H NOESY | 1.3 mM AhPDF1 | 100% D2O | 0 | 4.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, torsion angle dynamics | CCPNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 500 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | CCPNMR | 2.2.2 | CCPN |
2 | peak picking | CCPNMR | 2.2.2 | CCPN |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | structure solution | ARIA | 2.3 | Linge, O'Donoghue and Nilges |
5 | refinement | ARIA | 2.3 | Linge, O'Donoghue and Nilges |