Solution structure of the Aha1 dimer from Colwellia psychrerythraea
SOLUTION NMR - SOLUTION SCATTERING
NMR Experiment |
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
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1 | 2D 1H-15N HSQC | 1.3 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
2 | 2D 1H-15N HSQC | 0.7 mM [U-2H,13C,15N]; Ile 1-[13CH3]; Leu,Val-[13CH3] protein | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
3 | 2D 1H-15N HSQC | 1.1 mM [U-5%-13C,100%-15N] protein | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
4 | 2D 1H-15N HSQC | 1.1 mM [U-5%-13C,100%-15N] protein, 12.5 mg/mL Pf1 phage | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
5 | 2D 1H-1H TOCSY | 0.7 mM [U-2H,13C,15N]; Ile 1-[13CH3]; Leu,Val-[13CH3] protein | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
6 | 2D 1H-1H NOESY | 1.3 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
7 | 2D 1H-13C HSQC aromatic | 1.3 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
8 | 2D 1H-13C HSQC aliphatic | 1.3 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
9 | 2D 1H-13C HSQC aliphatic | 1.1 mM [U-5%-13C,100%-15N] protein | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
10 | 3D HNCO | 0.7 mM [U-2H,13C,15N]; Ile 1-[13CH3]; Leu,Val-[13CH3] protein | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
NMR Spectrometer Information |
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Spectrometer | Manufacturer | Model | Field Strength |
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1 | Bruker | Avance | 800 |
2 | Varian | INOVA | 600 |
NMR Refinement |
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Method | Details | Software |
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torsion angle dynamics | | TOPSPIN |
NMR Ensemble Information |
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Conformer Selection Criteria | target function |
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Conformers Calculated Total Number | 40000 |
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Conformers Submitted Total Number | 10 |
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Representative Model | 1 (structural features) |
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Computation: NMR Software |
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# | Classification | Version | Software Name | Author |
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1 | collection | TOPSPIN | 2.1 | Bruker |
2 | processing | TOPSPIN | 2.1 | Bruker |
3 | processing | NMRPipe | | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
4 | chemical shift assignment | SPARKY | | Goddard |
5 | data analysis | CYANA | | Guntert, Mumenthaler and Wuthrich |
6 | structure solution | CS-Rosetta | | Shen, Vernon, Baker and Bax |
7 | structure validation | PSVS | | Bhattacharya and Montelione |
8 | refinement | CS-Rosetta | | |