2M6Y

The solution structure of the J-domain of human DnaJA1


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1.03 mM [U-13C; U-15N] J-domain of DnaJA1, 20 mM MES, 0.02 % sodium azide, 10 mM DTT, 5 mM calcium chloride, 100 mM sodium chloride, 50 uM DSS90% H2O/10% D2O1256.5ambient298
22D 1H-13C HSQC1.03 mM [U-13C; U-15N] J-domain of DnaJA1, 20 mM MES, 0.02 % sodium azide, 10 mM DTT, 5 mM calcium chloride, 100 mM sodium chloride, 50 uM DSS90% H2O/10% D2O1256.5ambient298
33D HNCO1.03 mM [U-13C; U-15N] J-domain of DnaJA1, 20 mM MES, 0.02 % sodium azide, 10 mM DTT, 5 mM calcium chloride, 100 mM sodium chloride, 50 uM DSS90% H2O/10% D2O1256.5ambient298
43D HN(CA)CO1.03 mM [U-13C; U-15N] J-domain of DnaJA1, 20 mM MES, 0.02 % sodium azide, 10 mM DTT, 5 mM calcium chloride, 100 mM sodium chloride, 50 uM DSS90% H2O/10% D2O1256.5ambient298
53D HNCA1.03 mM [U-13C; U-15N] J-domain of DnaJA1, 20 mM MES, 0.02 % sodium azide, 10 mM DTT, 5 mM calcium chloride, 100 mM sodium chloride, 50 uM DSS90% H2O/10% D2O1256.5ambient298
63D HN(CO)CA1.03 mM [U-13C; U-15N] J-domain of DnaJA1, 20 mM MES, 0.02 % sodium azide, 10 mM DTT, 5 mM calcium chloride, 100 mM sodium chloride, 50 uM DSS90% H2O/10% D2O1256.5ambient298
73D CBCA(CO)NH1.03 mM [U-13C; U-15N] J-domain of DnaJA1, 20 mM MES, 0.02 % sodium azide, 10 mM DTT, 5 mM calcium chloride, 100 mM sodium chloride, 50 uM DSS90% H2O/10% D2O1256.5ambient298
83D CBCANH1.03 mM [U-13C; U-15N] J-domain of DnaJA1, 20 mM MES, 0.02 % sodium azide, 10 mM DTT, 5 mM calcium chloride, 100 mM sodium chloride, 50 uM DSS90% H2O/10% D2O1256.5ambient298
93D HNHA1.03 mM [U-13C; U-15N] J-domain of DnaJA1, 20 mM MES, 0.02 % sodium azide, 10 mM DTT, 5 mM calcium chloride, 100 mM sodium chloride, 50 uM DSS90% H2O/10% D2O1256.5ambient298
103D HBHA(CO)NH1.03 mM [U-13C; U-15N] J-domain of DnaJA1, 20 mM MES, 0.02 % sodium azide, 10 mM DTT, 5 mM calcium chloride, 100 mM sodium chloride, 50 uM DSS90% H2O/10% D2O1256.5ambient298
113D CC(CO)NH1.03 mM [U-13C; U-15N] J-domain of DnaJA1, 20 mM MES, 0.02 % sodium azide, 10 mM DTT, 5 mM calcium chloride, 100 mM sodium chloride, 50 uM DSS90% H2O/10% D2O1256.5ambient298
123D HCC(CO)NH1.03 mM [U-13C; U-15N] J-domain of DnaJA1, 20 mM MES, 0.02 % sodium azide, 10 mM DTT, 5 mM calcium chloride, 100 mM sodium chloride, 50 uM DSS90% H2O/10% D2O1256.5ambient298
133D HCCH-TOCSY1.03 mM [U-13C; U-15N] J-domain of DnaJA1, 20 mM MES, 0.02 % sodium azide, 10 mM DTT, 5 mM calcium chloride, 100 mM sodium chloride, 50 uM DSS90% H2O/10% D2O1256.5ambient298
143D HCCH-COSY1.03 mM [U-13C; U-15N] J-domain of DnaJA1, 20 mM MES, 0.02 % sodium azide, 10 mM DTT, 5 mM calcium chloride, 100 mM sodium chloride, 50 uM DSS90% H2O/10% D2O1256.5ambient298
153D 1H-15N NOESY1.03 mM [U-13C; U-15N] J-domain of DnaJA1, 20 mM MES, 0.02 % sodium azide, 10 mM DTT, 5 mM calcium chloride, 100 mM sodium chloride, 50 uM DSS90% H2O/10% D2O1256.5ambient298
163D 1H-13C NOESY1.03 mM [U-13C; U-15N] J-domain of DnaJA1, 20 mM MES, 0.02 % sodium azide, 10 mM DTT, 5 mM calcium chloride, 100 mM sodium chloride, 50 uM DSS90% H2O/10% D2O1256.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance500
2BrukerAvance600
NMR Refinement
MethodDetailsSoftware
distance geometry, torsion angle dynamics, simulated annealingCCPNMR_Analysis
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number400
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentCCPNMR_Analysis2.2.2CCPN
2data analysisCCPNMR_Analysis2.2.2CCPN
3peak pickingCCPNMR_Analysis2.2.2CCPN
4processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5structure validationPSVSBhattacharya and Montelione
6collectionTOPSPINBruker Biospin
7structure solutionX-PLOR_NIHSchwieters, Kuszewski, Tjandra and Clore
8refinementX-PLOR_NIHSchwieters, Kuszewski, Tjandra and Clore
9geometry optimizationX-PLOR_NIHSchwieters, Kuszewski, Tjandra and Clore