SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5 mM [U-100% 15N] ING4 PHD mutant N214D, 30 uM DSS, 1 mM DTT, 20 mM sodium phosphate, 50 mM sodium chloride90% H2O/10% D2O706.51 atm298
22D 1H-1H NOESY0.5 mM [U-100% 15N] ING4 PHD mutant N214D, 30 uM DSS, 1 mM DTT, 20 mM sodium phosphate, 50 mM sodium chloride90% H2O/10% D2O706.51 atm298
33D 1H-15N NOESY0.5 mM [U-100% 15N] ING4 PHD mutant N214D, 30 uM DSS, 1 mM DTT, 20 mM sodium phosphate, 50 mM sodium chloride90% H2O/10% D2O706.51 atm298
43D 1H-15N TOCSY0.5 mM [U-100% 15N] ING4 PHD mutant N214D, 30 uM DSS, 1 mM DTT, 20 mM sodium phosphate, 50 mM sodium chloride90% H2O/10% D2O706.51 atm298
52D 1H-1H TOCSY0.5 mM [U-100% 15N] ING4 PHD mutant N214D, 30 uM DSS, 1 mM DTT, 20 mM sodium phosphate, 50 mM sodium chloride90% H2O/10% D2O706.51 atm298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance600
2BrukerAvance700
NMR Refinement
MethodDetailsSoftware
torsion angle dynamics, molecular dynamicsSimulated annealing combined with torsion angle dynamics. Iterative cycles of structure calculation and NOE assignment. Energy minimization in vacuo with implicit solvent (distance dependent dielecric constant)xwinnmr
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number25
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionxwinnmrBruker
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3data analysisNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4data analysisNMRViewJohnson, One Moon Scientific
5chemical shift assignmentNMRViewJohnson, One Moon Scientific
6peak pickingNMRViewJohnson, One Moon Scientific
7structure solutionCYANAGuntert, Mumenthaler and Wuthrich
8refinementAMBERCase, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo and Kollman
9refinementCYANAGuntert, Mumenthaler and Wuthrich