2LYD | pdb_00002lyd

The solution structure of the Dm DCP1 EVH1 domain in complex with the XRN1 DBM peptide

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_2	90% H2O/10% D2O	300	7.1	ambient	298
2	3D C(CO)NH	0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_2	90% H2O/10% D2O	300	7.1	ambient	298
3	3D HNCACB	0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_2	90% H2O/10% D2O	300	7.1	ambient	298
4	3D 1H-15N NOESY	0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_2	90% H2O/10% D2O	300	7.1	ambient	298
5	3D 1H-13C NOESY	0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_2	90% H2O/10% D2O	300	7.1	ambient	298
6	3D HNHA	0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_2	90% H2O/10% D2O	300	7.1	ambient	298
7	3D HCCH-TOCSY	0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_2	90% H2O/10% D2O	300	7.1	ambient	298
8	3D HNHB	0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_2	90% H2O/10% D2O	300	7.1	ambient	298
9	2D NOESYnoN	0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_2	90% H2O/10% D2O	300	7.1	ambient	298
10	2D PLUSH-TACSY	0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_2	90% H2O/10% D2O	300	7.1	ambient	298
11	3D NNH NOESY	0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_2	90% H2O/10% D2O	300	7.1	ambient	298
12	3D CNH NOESY	0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_2	90% H2O/10% D2O	300	7.1	ambient	298
13	3D CCH NOESY	0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_2	90% H2O/10% D2O	300	7.1	ambient	298
14	4D CCANH	0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_2	90% H2O/10% D2O	300	7.1	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
simulated annealing		Sparky

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	50
Conformers Submitted Total Number	21
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	Sparky		Goddard
2	refinement	XPLOR		Brunger, A.T. et al.