2LYD

The solution structure of the Dm DCP1 EVH1 domain in complex with the XRN1 DBM peptide


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_290% H2O/10% D2O3007.1ambient298
23D C(CO)NH0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_290% H2O/10% D2O3007.1ambient298
33D HNCACB0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_290% H2O/10% D2O3007.1ambient298
43D 1H-15N NOESY0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_290% H2O/10% D2O3007.1ambient298
53D 1H-13C NOESY0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_290% H2O/10% D2O3007.1ambient298
63D HNHA0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_290% H2O/10% D2O3007.1ambient298
73D HCCH-TOCSY0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_290% H2O/10% D2O3007.1ambient298
83D HNHB0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_290% H2O/10% D2O3007.1ambient298
92D NOESYnoN0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_290% H2O/10% D2O3007.1ambient298
102D PLUSH-TACSY0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_290% H2O/10% D2O3007.1ambient298
113D NNH NOESY0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_290% H2O/10% D2O3007.1ambient298
123D CNH NOESY0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_290% H2O/10% D2O3007.1ambient298
133D CCH NOESY0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_290% H2O/10% D2O3007.1ambient298
144D CCANH0.4 mM [U-100% 15N] protein_1, 0.7 mM [U-100% 13C; U-100% 15N] protein_1, 0.4 mM [U-100% 15N] protein_2, 0.7 mM [U-100% 13C; U-100% 15N] protein_290% H2O/10% D2O3007.1ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
2BrukerAVANCE800
NMR Refinement
MethodDetailsSoftware
simulated annealingSparky
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number50
Conformers Submitted Total Number21
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentSparkyGoddard
2refinementXPLORBrunger, A.T. et al.