2LY1

NMR structure of the second and third lotus domains of tudor domain-containing protein 7 (NMR ensemble overlay for Lotus #2)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-100% 13C; U-100% 15N] TDRD7 (LOTUS1-LOTUS2), 90 % H2O, 10 % D2O90% H2O/10% D2O0.267.01 atm298
22D 1H-13C HSQC1 mM [U-100% 13C; U-100% 15N] TDRD7 (LOTUS1-LOTUS2), 90 % H2O, 10 % D2O90% H2O/10% D2O0.267.01 atm298
32D 1H-13C HSQC aromatic1 mM [U-100% 13C; U-100% 15N] TDRD7 (LOTUS1-LOTUS2), 90 % H2O, 10 % D2O90% H2O/10% D2O0.267.01 atm298
43D CBCA(CO)NH1 mM [U-100% 13C; U-100% 15N] TDRD7 (LOTUS1-LOTUS2), 90 % H2O, 10 % D2O90% H2O/10% D2O0.267.01 atm298
53D CBCA(CO)NH1 mM [U-100% 13C; U-100% 15N] TDRD7 (LOTUS1-LOTUS2), 90 % H2O, 10 % D2O90% H2O/10% D2O0.267.01 atm298
63D HNCO1 mM [U-100% 13C; U-100% 15N] TDRD7 (LOTUS1-LOTUS2), 90 % H2O, 10 % D2O90% H2O/10% D2O0.267.01 atm298
73D HN(CA)CO1 mM [U-100% 13C; U-100% 15N] TDRD7 (LOTUS1-LOTUS2), 90 % H2O, 10 % D2O90% H2O/10% D2O0.267.01 atm298
83D H(CCO)NH1 mM [U-100% 13C; U-100% 15N] TDRD7 (LOTUS1-LOTUS2), 90 % H2O, 10 % D2O90% H2O/10% D2O0.267.01 atm298
93D C(CO)NH1 mM [U-100% 13C; U-100% 15N] TDRD7 (LOTUS1-LOTUS2), 90 % H2O, 10 % D2O90% H2O/10% D2O0.267.01 atm298
103D HCCH-TOCSY1 mM [U-100% 13C; U-100% 15N] TDRD7 (LOTUS1-LOTUS2), 90 % H2O, 10 % D2O90% H2O/10% D2O0.267.01 atm298
113D 1H-15N NOESY1 mM [U-100% 13C; U-100% 15N] TDRD7 (LOTUS1-LOTUS2), 90 % H2O, 10 % D2O90% H2O/10% D2O0.267.01 atm298
123D 1H-13C NOESY aliphatic1 mM [U-100% 13C; U-100% 15N] TDRD7 (LOTUS1-LOTUS2), 90 % H2O, 10 % D2O90% H2O/10% D2O0.267.01 atm298
133D 1H-13C NOESY aromatic1 mM [U-100% 13C; U-100% 15N] TDRD7 (LOTUS1-LOTUS2), 90 % H2O, 10 % D2O90% H2O/10% D2O0.267.01 atm298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE700
NMR Refinement
MethodDetailsSoftware
simulated annealingNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2data analysisNMRViewJohnson, One Moon Scientific
3collectionXwinNMRBruker Biospin
4data analysisSANEDuggan, Legge, Dyson & Wright
5structure solutionCYANAGuntert, Mumenthaler and Wuthrich
6refinementAmberCase, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman