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Solution-state NMR structure of the human prion protein
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.5 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 0.1 5.5 ambient 298 2 3D HNCO 1.5 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 0.1 5.5 ambient 298 3 3D HNCA 1.5 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 0.1 5.5 ambient 298 4 3D CBCA(CO)NH 1.5 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 0.1 5.5 ambient 298 5 3D HNCACB 1.5 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 0.1 5.5 ambient 298 6 3D 1H-15N NOESY 1.5 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 0.1 5.5 ambient 298 7 3D HBHA(CO)NH 1.5 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 0.1 5.5 ambient 298 8 3D HCCH-TOCSY 1.5 mM [U-100% 13C; U-100% 15N] protein 100% D2O 0.1 5.5 ambient 298 9 3D 1H-13C NOESY aliphatic 1.5 mM [U-100% 13C; U-100% 15N] protein 100% D2O 0.1 5.5 ambient 298 10 3D 1H-13C NOESY aromatic 1.5 mM [U-100% 13C; U-100% 15N] protein 100% D2O 0.1 5.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian Uniform NMR System 800
NMR Refinement Method Details Software molecular dynamics NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 data analysis Sparky Goddard 3 structure solution CYANA Guntert, Mumenthaler and Wuthrich 4 refinement YASARA Krieger, Nabuurs and Spronk