2LRL
Solution Structures of the IIA(Chitobiose)-HPr complex of the N,N'-Diacetylchitobiose Branch of the Escherichia coli Phosphotransferase System
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.0 mM [U-99% 13C; U-99% 15N] protein, 1.0 mM D2O | 95% H2O/5% D2O | 0.02 | 7.4 | ambient | 308 | |
2 | 3D CBCA(CO)NH | 1.0 mM [U-99% 13C; U-99% 15N] protein, 1.0 mM D2O | 95% H2O/5% D2O | 0.02 | 7.4 | ambient | 308 | |
3 | 3D HN(COCA)CB | 1.0 mM [U-99% 13C; U-99% 15N] protein, 1.0 mM D2O | 95% H2O/5% D2O | 0.02 | 7.4 | ambient | 308 | |
4 | 3D HNCA | 1.0 mM [U-99% 13C; U-99% 15N] protein, 1.0 mM D2O | 95% H2O/5% D2O | 0.02 | 7.4 | ambient | 308 | |
5 | c13-c12 edited/filted NOESY | 1.0 mM [U-99% 13C; U-99% 15N] protein, 1.0 mM D2O | 95% H2O/5% D2O | 0.02 | 7.4 | ambient | 308 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
3 | Bruker | AVANCE | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | conjoined rigid body/torsion angle simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | geometry optimization | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
2 | data analysis | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
3 | chemical shift assignment | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
4 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |