Solution Structures of the IIA(Chitobiose)-HPr complex of the N,N'-Diacetylchitobiose Branch of the Escherichia coli Phosphotransferase System
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 1.0 mM [U-99% 13C; U-99% 15N] protein, 1.0 mM D2O | 95% H2O/5% D2O | 0.02 | 7.4 | ambient | 308 | |
| 2 | 3D CBCA(CO)NH | 1.0 mM [U-99% 13C; U-99% 15N] protein, 1.0 mM D2O | 95% H2O/5% D2O | 0.02 | 7.4 | ambient | 308 | |
| 3 | 3D HN(COCA)CB | 1.0 mM [U-99% 13C; U-99% 15N] protein, 1.0 mM D2O | 95% H2O/5% D2O | 0.02 | 7.4 | ambient | 308 | |
| 4 | 3D HNCA | 1.0 mM [U-99% 13C; U-99% 15N] protein, 1.0 mM D2O | 95% H2O/5% D2O | 0.02 | 7.4 | ambient | 308 | |
| 5 | c13-c12 edited/filted NOESY | 1.0 mM [U-99% 13C; U-99% 15N] protein, 1.0 mM D2O | 95% H2O/5% D2O | 0.02 | 7.4 | ambient | 308 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| 2 | Bruker | AVANCE | 800 |
| 3 | Bruker | AVANCE | 900 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | conjoined rigid body/torsion angle simulated annealing | X-PLOR NIH |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the least restraint violations |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | geometry optimization | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
| 2 | data analysis | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
| 3 | chemical shift assignment | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
| 4 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |














