2LRE
The solution structure of the dimeric Acanthaporin
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.7 mM [U-100% 15N] acanthaporin_dimer, 25 mM [U-2H] TRIS, 0.001 % sodium azide | 93% H2O/7% D2O | 0.025 | 8.0 | ambient | 293 | |
2 | 2D 1H-1H TOCSY | 0.7 mM [U-100% 15N] acanthaporin_dimer, 25 mM [U-2H] TRIS, 0.001 % sodium azide | 100% D2O | 0.025 | 8.0 | ambient | 293 | |
3 | 2D 1H-1H NOESY | 0.7 mM [U-100% 15N] acanthaporin_dimer, 25 mM [U-2H] TRIS, 0.001 % sodium azide | 100% D2O | 0.025 | 8.0 | ambient | 293 | |
4 | 3D 1H-15N NOESY | 0.7 mM [U-100% 15N] acanthaporin_dimer, 25 mM [U-2H] TRIS, 0.001 % sodium azide | 93% H2O/7% D2O | 0.025 | 8.0 | ambient | 293 | |
5 | 3D 1H-15N TOCSY | 0.7 mM [U-100% 15N] acanthaporin_dimer, 25 mM [U-2H] TRIS, 0.001 % sodium azide | 93% H2O/7% D2O | 0.025 | 8.0 | ambient | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 750 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, torsion angle dynamics | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 400 |
Conformers Submitted Total Number | 17 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
3 | data analysis | NMRView | Johnson, One Moon Scientific | |
4 | peak picking | NMRView | Johnson, One Moon Scientific | |
5 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
6 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |