2LQV | pdb_00002lqv

YebF

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	298
2	3D CBCA(CO)NH	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	298
3	3D HNCACB	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	298
4	3D HNCO	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	298
5	3D HCACO	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	298
6	3D HCCH-TOCSY	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	298
7	3D 1H-15N NOESY	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	298
8	3D 1H-13C NOESY	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	298
9	CCC-TOCSY-NNH	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	298
10	HCC-TOCSY-NNH	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	298
11	(HB)CB(CGCD)HD-aromatic	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	298
12	HBGCBGCCBGCACONNH	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	298
13	CT-HSQC	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	298
14	2D 1H-15N HSQC	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	308
15	3D CBCA(CO)NH	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	308
16	3D HNCACB	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	308
17	3D HNCO	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	308
18	3D HCACO	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	308
19	3D HCCH-TOCSY	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	308
20	3D 1H-15N NOESY	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	308
21	3D 1H-13C NOESY	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	308
22	CCC-TOCSY-NNH	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	308
23	HCC-TOCSY-NNH	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	308
24	(HB)CB(CGCD)HD-aromatic	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	308
25	HBGCBGCCBGCACONNH	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	308
26	CT-HSQC	0.5-1 mM [U-100% 13C; U-100% 15N] E coli protein, 50 mM HEPES, 100 mM sodium chloride, 0.1 mM TCEP, 0.1 mM PMSF, 95 % H2O, 5 % D2O	95% H2O/5% D2O	0.1	6.5	ambient	308

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	UNITY	500
2	Varian	UNITY	600

NMR Refinement
Method	Details	Software
distance geometry, simulated annealing		NMRPipe

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	10
Conformers Submitted Total Number	10
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	data analysis	NMRDraw		Johnson, One Moon Scientific
3	processing	NMRDraw		Johnson, One Moon Scientific
4	chemical shift assignment	Sparky		Goddard
5	peak picking	Sparky		Goddard
6	geometry optimization	TALOS		Cornilescu, Delaglio and Bax
7	structure solution	TALOS		Cornilescu, Delaglio and Bax
8	structure solution	CYANA		Guntert, Mumenthaler and Wuthrich
9	refinement	CYANA		Guntert, Mumenthaler and Wuthrich
10	refinement	CNSSOLVE		Brunger, Adams, Clore, Gros, Nilges and Read