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Low resolution structure of RNA-binding subunit of the TRAMP complex
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 100 uM uM [U-99% 13C; U-99% 15N] protein_1 90% H2O/10% D2O 0.5 8 ambient 293 2 3D 1H-15N NOESY 100 uM uM [U-99% 13C; U-99% 15N] protein_1 90% H2O/10% D2O 0.5 8 ambient 293 3 3D 1H-13C NOESY aliphatic 100 uM uM [U-99% 13C; U-99% 15N] protein_1 90% H2O/10% D2O 0.5 8 ambient 293 4 3D HNCACB 100 uM uM [U-99% 13C; U-99% 15N] protein_1 90% H2O/10% D2O 0.5 8 ambient 293 5 3D CBCA(CO)NH 100 uM uM [U-99% 13C; U-99% 15N] protein_1 90% H2O/10% D2O 0.5 8 ambient 293 6 3D HNHA 100 uM uM [U-99% 13C; U-99% 15N] protein_1 90% H2O/10% D2O 0.5 8 ambient 293 7 3D HNCA 100 uM uM [U-99% 13C; U-99% 15N] protein_1 90% H2O/10% D2O 0.5 8 ambient 293
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 900
NMR Refinement Method Details Software torsion angle dynamics, simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 40 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 2 refinement CYANA 2.1 Guntert, Mumenthaler and Wuthrich 3 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman