2LGD
The high resolution structure of ubiquitin like domain of UBLCP1
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.5 mM [U-99% 15N] UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1-1 | 90% H2O/10% D2O | 100 | 7.0 | AMBIENT | 298 | |
2 | 3D CBCA(CO)NH | 1.5 mM [U-95% 13C; U-95% 15N] UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1-3 | 90% H2O/10% D2O | 100 | 7.0 | AMBIENT | 298 | |
3 | 3D HNCO | 1.5 mM [U-95% 13C; U-95% 15N] UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1-3 | 90% H2O/10% D2O | 100 | 7.0 | AMBIENT | 298 | |
4 | 3D HNCA | 1.5 mM [U-95% 13C; U-95% 15N] UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1-3 | 90% H2O/10% D2O | 100 | 7.0 | AMBIENT | 298 | |
5 | 3D HNCACB | 1.5 mM [U-95% 13C; U-95% 15N] UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1-3 | 90% H2O/10% D2O | 100 | 7.0 | AMBIENT | 298 | |
6 | 3D HBHA(CO)NH | 1.5 mM [U-95% 13C; U-95% 15N] UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1-3 | 90% H2O/10% D2O | 100 | 7.0 | AMBIENT | 298 | |
7 | 3D HCCH-TOCSY | 1.5 mM [U-95% 13C] UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1-2 | 100% D2O | 100 | 7.0 | AMBIENT | 298 | |
8 | 3D 1 15N NOESY | 1.5 mM [U-99% 15N] UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1-1 | 90% H2O/10% D2O | 100 | 7.0 | AMBIENT | 298 | |
9 | 3D 1H-13C NOESY | 1.5 mM [U-95% 13C] UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1-2 | 100% D2O | 100 | 7.0 | AMBIENT | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | AutoAssign |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (minimized average structure) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | AutoAssign | Zimmerman, Moseley, Kulikowski and Montelione | |
2 | data analysis | MOLMOL_NMRDRAW | Koradi, Billeter and Wuthrich | |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | refinement | PROCHECKNMR | Laskowski and MacArthur | |
5 | chemical shift assignment | Sparky | Goddard | |
6 | peak picking | Sparky | Goddard | |
7 | processing | XwinNMR | Bruker Biospin | |
8 | structure solution | TALOS | Cornilescu, Delaglio and Bax | |
9 | refinement | CYANA | 2.2.5 | P.GUNTERT ET AL. |
10 | structure solution | CYANA | 2.2.5 | P.GUNTERT ET AL. |
11 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |