2LFV | pdb_00002lfv

Solution Structure of the SPOR domain from E. coli DamX


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.7 mM [U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 90 % H2O, 10 % [U-99% 2H] D2O90% H2O/10% D2O6.5ambient298
22D 1H-13C HMQC0.7 mM [U-99% 13C; U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 100 % [U-99% 2H] D2O100% D2O6.5ambient298
33D HNCA0.7 mM [U-99% 13C; U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 90 % H2O, 10 % [U-99% 2H] D2O90% H2O/10% D2O6.5ambient298
43D HN(CO)CA0.7 mM [U-99% 13C; U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 90 % H2O, 10 % [U-99% 2H] D2O90% H2O/10% D2O6.5ambient298
53D HNCACB0.7 mM [U-99% 13C; U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 90 % H2O, 10 % [U-99% 2H] D2O90% H2O/10% D2O6.5ambient298
63D CBCA(CO)NH0.7 mM [U-99% 13C; U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 90 % H2O, 10 % [U-99% 2H] D2O90% H2O/10% D2O6.5ambient298
73D HNCO0.7 mM [U-99% 13C; U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 90 % H2O, 10 % [U-99% 2H] D2O90% H2O/10% D2O6.5ambient298
83D HN(CA)CO0.7 mM [U-99% 13C; U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 90 % H2O, 10 % [U-99% 2H] D2O90% H2O/10% D2O6.5ambient298
93D 1H-15N TOCSY0.7 mM [U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 90 % H2O, 10 % [U-99% 2H] D2O90% H2O/10% D2O6.5ambient298
103D 1H-15N NOESY0.7 mM [U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 90 % H2O, 10 % [U-99% 2H] D2O90% H2O/10% D2O6.5ambient298
112D DQF-COSY0.7 mM [U-99% 13C; U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 100 % [U-99% 2H] D2O100% D2O6.5ambient298
122D 1H-1H NOESY0.7 mM [U-99% 13C; U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 100 % [U-99% 2H] D2O100% D2O6.5ambient298
132D 1H-1H TOCSY0.7 mM [U-99% 13C; U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 100 % [U-99% 2H] D2O100% D2O6.5ambient298
143D C(CO)NH0.7 mM [U-99% 13C; U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 90 % H2O, 10 % [U-99% 2H] D2O90% H2O/10% D2O6.5ambient298
153D H(CCO)NH0.7 mM [U-99% 13C; U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 90 % H2O, 10 % [U-99% 2H] D2O90% H2O/10% D2O6.5ambient298
16(HB)CB(CGCD)HE0.7 mM [U-99% 13C; U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 100 % [U-99% 2H] D2O100% D2O6.5ambient298
17(HB)CB(CGCDCE)HE0.7 mM [U-99% 13C; U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 100 % [U-99% 2H] D2O100% D2O6.5ambient298
183D 1H-13C NOESY0.7 mM [U-99% 13C; U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 100 % [U-99% 2H] D2O100% D2O6.5ambient298
193D 1H-13C NOESY0.7 mM [U-99% 13C; U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 90 % H2O, 10 % [U-99% 2H] D2O90% H2O/10% D2O6.5ambient298
203D HCCH-TOCSY0.7 mM [U-99% 13C; U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 100 % [U-99% 2H] D2O100% D2O6.5ambient298
212D 1H-15N IPAP HSQC0.7 mM [U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 90 % H2O, 10 % [U-99% 2H] D2O90% H2O/10% D2O6.5ambient298
222D 1H-15N IPAP HSQC0.7 mM [U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 5 % PEG(C12E5):n-hexanol, 90 % H2O, 10 % [U-99% 2H] D2O90% H2O/10% D2O6.5ambient298
232D 15N T10.7 mM [U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 90 % H2O, 10 % [U-99% 2H] D2O90% H2O/10% D2O6.5ambient298
242D 15N T20.7 mM [U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 90 % H2O, 10 % [U-99% 2H] D2O90% H2O/10% D2O6.5ambient298
252D {1H}-15N NOE0.7 mM [U-99% 15N] DamX SPOR domain polypeptide, 50 mM potassium phosphate, 50 mM potassium chloride, 90 % H2O, 10 % [U-99% 2H] D2O90% H2O/10% D2O6.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number250
Conformers Submitted Total Number25
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsThe SPOR domain consists of residues 344-428. Structure analysis and statistics in the accompanying publication consider only this portion of the construct. Residues 323-338 are poorly constrained and represent a His-tag plus linker; this region accounts for roughly half of the close contacts and Ramachandran outliers noted in this file.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2peak pickingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3collectionVnmrJ2.1BVarian
4peak pickingCCPN_Analysis1.0.15CCPN
5chemical shift assignmentCCPN_Analysis1.0.15CCPN
6data analysisCCPN_Analysis1.0.15CCPN
7data analysisTALOSCornilescu, Delaglio and Bax
8data analysiscurvefitPalmer
9structure solutionX-PLOR NIH2.23Schwieters, Kuszewski, Tjandra and Clore
10refinementX-PLOR NIH2.23Schwieters, Kuszewski, Tjandra and Clore
11structure analysisProcheckNMR3.5.4Laskowski and MacArthur