2LEX

Complex of the C-terminal WRKY domain of AtWRKY4 and a W-box DNA


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY0.4-1.0 mM WRKY domain-1, 0.4-1.0 mM W-box DNA chain 1-2, 0.4-1.0 mM W-box DNA chain 2-3, 20 mM potassium phosphate-4, 200 mM potassium chloride-5, 20 uM zinc chloride-6, 1 mM [U-2H] DTT-7, 50 uM DSS-895% H2O/5% D2O2006.0ambient303
22D 1H-1H TOCSY0.4-1.0 mM WRKY domain-1, 0.4-1.0 mM W-box DNA chain 1-2, 0.4-1.0 mM W-box DNA chain 2-3, 20 mM potassium phosphate-4, 200 mM potassium chloride-5, 20 uM zinc chloride-6, 1 mM [U-2H] DTT-7, 50 uM DSS-895% H2O/5% D2O2006.0ambient303
32D DQF-COSY0.4-1.0 mM WRKY domain-1, 0.4-1.0 mM W-box DNA chain 1-2, 0.4-1.0 mM W-box DNA chain 2-3, 20 mM potassium phosphate-4, 200 mM potassium chloride-5, 20 uM zinc chloride-6, 1 mM [U-2H] DTT-7, 50 uM DSS-895% H2O/5% D2O2006.0ambient303
42D 1H-15N HSQC0.4-1.0 mM [U-13C; U-15N] WRKY domain-9, 0.4-1.0 mM W-box DNA chain 1-10, 0.4-1.0 mM W-box DNA chain 2-11, 20 mM potassium phosphate-12, 200 mM potassium chloride-13, 20 uM zinc chloride-14, 1 mM [U-2H] DTT-15, 50 uM DSS-1695% H2O/5% D2O2006.0ambient303
53D HNCA0.4-1.0 mM [U-13C; U-15N] WRKY domain-9, 0.4-1.0 mM W-box DNA chain 1-10, 0.4-1.0 mM W-box DNA chain 2-11, 20 mM potassium phosphate-12, 200 mM potassium chloride-13, 20 uM zinc chloride-14, 1 mM [U-2H] DTT-15, 50 uM DSS-1695% H2O/5% D2O2006.0ambient303
63D HN(CO)CA0.4-1.0 mM [U-13C; U-15N] WRKY domain-9, 0.4-1.0 mM W-box DNA chain 1-10, 0.4-1.0 mM W-box DNA chain 2-11, 20 mM potassium phosphate-12, 200 mM potassium chloride-13, 20 uM zinc chloride-14, 1 mM [U-2H] DTT-15, 50 uM DSS-1695% H2O/5% D2O2006.0ambient303
73D HNCACB0.4-1.0 mM [U-13C; U-15N] WRKY domain-9, 0.4-1.0 mM W-box DNA chain 1-10, 0.4-1.0 mM W-box DNA chain 2-11, 20 mM potassium phosphate-12, 200 mM potassium chloride-13, 20 uM zinc chloride-14, 1 mM [U-2H] DTT-15, 50 uM DSS-1695% H2O/5% D2O2006.0ambient303
83D CBCA(CO)NH0.4-1.0 mM [U-13C; U-15N] WRKY domain-9, 0.4-1.0 mM W-box DNA chain 1-10, 0.4-1.0 mM W-box DNA chain 2-11, 20 mM potassium phosphate-12, 200 mM potassium chloride-13, 20 uM zinc chloride-14, 1 mM [U-2H] DTT-15, 50 uM DSS-1695% H2O/5% D2O2006.0ambient303
93D 1H-15N NOESY0.4-1.0 mM [U-13C; U-15N] WRKY domain-9, 0.4-1.0 mM W-box DNA chain 1-10, 0.4-1.0 mM W-box DNA chain 2-11, 20 mM potassium phosphate-12, 200 mM potassium chloride-13, 20 uM zinc chloride-14, 1 mM [U-2H] DTT-15, 50 uM DSS-1695% H2O/5% D2O2006.0ambient303
103D 1H-15N TOCSY0.4-1.0 mM [U-13C; U-15N] WRKY domain-9, 0.4-1.0 mM W-box DNA chain 1-10, 0.4-1.0 mM W-box DNA chain 2-11, 20 mM potassium phosphate-12, 200 mM potassium chloride-13, 20 uM zinc chloride-14, 1 mM [U-2H] DTT-15, 50 uM DSS-1695% H2O/5% D2O2006.0ambient303
112D 1H-15N HSQC0.4-1.0 mM [U-13C; U-15N] WRKY domain-17, 0.4-1.0 mM W-box DNA chain 1-18, 0.4-1.0 mM W-box DNA chain 2-19, 20 mM potassium phosphate-20, 200 mM potassium chloride-21, 20 uM zinc chloride-22, 1 mM [U-2H] DTT-23, 50 uM DSS-24100% D2O2006.0ambient283
122D 1H-15N HSQC0.4-1.0 mM [U-15N] WRKY domain-25, 0.4-1.0 mM [U-15N]-T W-box DNA chain 1-26, 0.4-1.0 mM [U-15N]-T W-box DNA chain 2-27, 20 mM potassium phosphate-28, 200 mM potassium chloride-29, 20 uM zinc chloride-30, 1 mM [U-2H] DTT-31, 50 uM DSS-3295% H2O/5% D2O2006.0ambient298
132D 1H-15N IPAP-HSQC0.4-1.0 mM [U-15N] WRKY domain-25, 0.4-1.0 mM [U-15N]-T W-box DNA chain 1-26, 0.4-1.0 mM [U-15N]-T W-box DNA chain 2-27, 20 mM potassium phosphate-28, 200 mM potassium chloride-29, 20 uM zinc chloride-30, 1 mM [U-2H] DTT-31, 50 uM DSS-3295% H2O/5% D2O2006.0ambient298
142D 1H-15N HSQC0.4-1.0 mM [U-15N] WRKY domain-33, 0.4-1.0 mM [U-15N]-T W-box DNA chain 1-34, 0.4-1.0 mM [U-15N]-T W-box DNA chain 2-35, 20 mM potassium phosphate-36, 200 mM potassium chloride-37, 20 uM zinc chloride-38, 1 mM [U-2H] DTT-39, 50 uM DSS-40, 12 mg/mL Pf1 phage-4195% H2O/5% D2O2006.0ambient298
152D 1H-15N IPAP-HSQC0.4-1.0 mM [U-15N] WRKY domain-33, 0.4-1.0 mM [U-15N]-T W-box DNA chain 1-34, 0.4-1.0 mM [U-15N]-T W-box DNA chain 2-35, 20 mM potassium phosphate-36, 200 mM potassium chloride-37, 20 uM zinc chloride-38, 1 mM [U-2H] DTT-39, 50 uM DSS-40, 12 mg/mL Pf1 phage-4195% H2O/5% D2O2006.0ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDMX750
2BrukerDMX500
NMR Refinement
MethodDetailsSoftware
simulated annealingCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCNS1.1Brunger, Adams, Clore, Gros, Nilges and Read
2refinementCNS1.1Brunger, Adams, Clore, Gros, Nilges and Read
3data analysisFelix2000Accelrys Software Inc.
4data analysisTALOS+Shen, Delaglio, Cornilescu, Bax