2L9W | pdb_00002l9w

Solution Structure of the C-terminal domain of Prp24


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC600 uM [U-99% 13C; U-99% 15N] L4W, 18 mM potassium phosphate pH 6, 45 mM potassium chloride, 0.9 mM DTT90% H2O/10% D2O6ambient298
23D CBCA(CO)NH600 uM [U-99% 13C; U-99% 15N] L4W, 18 mM potassium phosphate pH 6, 45 mM potassium chloride, 0.9 mM DTT90% H2O/10% D2O6ambient298
33D 1H-15N NOESY600 uM [U-99% 13C; U-99% 15N] L4W, 18 mM potassium phosphate pH 6, 45 mM potassium chloride, 0.9 mM DTT90% H2O/10% D2O6ambient298
43D HNCACB600 uM [U-99% 13C; U-99% 15N] L4W, 18 mM potassium phosphate pH 6, 45 mM potassium chloride, 0.9 mM DTT90% H2O/10% D2O6ambient298
53D HNCO600 uM [U-99% 13C; U-99% 15N] L4W, 18 mM potassium phosphate pH 6, 45 mM potassium chloride, 0.9 mM DTT90% H2O/10% D2O6ambient298
63D HBHA(CO)NH600 uM [U-99% 13C; U-99% 15N] L4W, 18 mM potassium phosphate pH 6, 45 mM potassium chloride, 0.9 mM DTT90% H2O/10% D2O6ambient298
73D C(CO)NH600 uM [U-99% 13C; U-99% 15N] L4W, 18 mM potassium phosphate pH 6, 45 mM potassium chloride, 0.9 mM DTT90% H2O/10% D2O6ambient298
83D H(CCO)NH600 uM [U-99% 13C; U-99% 15N] L4W, 18 mM potassium phosphate pH 6, 45 mM potassium chloride, 0.9 mM DTT90% H2O/10% D2O6ambient298
92D 1H-13C HSQC aliphatic600 uM [U-99% 13C; U-99% 15N] L4W, 18 mM [U-99% 2H] potassium phosphate pH 6, 45 mM [U-99% 2H] potassium chloride100% D2O6ambient298
102D 1H-13C HSQC aromatic600 uM [U-99% 13C; U-99% 15N] L4W, 18 mM [U-99% 2H] potassium phosphate pH 6, 45 mM [U-99% 2H] potassium chloride100% D2O6ambient298
112D 1H-1H NOESY600 uM L4W, 18 mM [U-99% 2H] potassium phosphate pH 6, 45 mM [U-99% 2H] potassium chloride100% D2O6ambient298
123D HCCH-TOCSY600 uM [U-99% 13C; U-99% 15N] L4W, 18 mM [U-99% 2H] potassium phosphate pH 6, 45 mM [U-99% 2H] potassium chloride100% D2O6ambient298
133D 1H-13C NOESY aliphatic600 uM [U-99% 13C; U-99% 15N] L4W, 18 mM [U-99% 2H] potassium phosphate pH 6, 45 mM [U-99% 2H] potassium chloride100% D2O6ambient298
143D 1H-13C NOESY aromatic600 uM [U-99% 13C; U-99% 15N] L4W, 18 mM [U-99% 2H] potassium phosphate pH 6, 45 mM [U-99% 2H] potassium chloride100% D2O6ambient298
152D 1H-13C HSQC aliphatic600 uM [U-99% 13C; U-99% 15N] L4W, 18 mM potassium phosphate pH 6, 45 mM potassium chloride, 1 uM DSS90% H2O/10% D2O6ambient298
162D-NHSQC-IPAP600 uM [U-99% 13C; U-99% 15N] L4W, 18 mM potassium phosphate pH 6, 45 mM potassium chloride, 0.9 mM DTT90% H2O/10% D2O6ambient304
172D-NHSQC-IPAP600 uM [U-99% 13C; U-99% 15N] L4W, 18 mM potassium phosphate pH 6, 45 mM potassium chloride, 0.9 mM DTT, 6.5 % DMPC/DHPC q=3, 0.67 mg/mL CTAB90% H2O/10% D2O6ambient304
183D-Jmodulated-CHSQC600 uM [U-99% 13C; U-99% 15N] L4W, 18 mM potassium phosphate pH 6, 45 mM potassium chloride, 0.9 mM DTT90% H2O/10% D2O6ambient304
193D-Jmodulated-CHSQC600 uM [U-99% 13C; U-99% 15N] L4W, 18 mM potassium phosphate pH 6, 45 mM potassium chloride, 0.9 mM DTT, 6.5 % DMPC/DHPC q=3, 0.67 mg/mL CTAB90% H2O/10% D2O6ambient304
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianUniform NMR System600
2BrukerDMX750
3VarianUniform NMR System900
NMR Refinement
MethodDetailsSoftware
simulated annealingVnmrJ
NMR Ensemble Information
Conformer Selection Criteriaall calculated structures submitted
Conformers Calculated Total Number20
Conformers Submitted Total Number20
Representative Model1 (lowest average pairwise rmsd)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVnmrJVarian
2collectionXwinNMRBruker Biospin
3processingNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4chemical shift assignmentSparkyGoddard
5data analysisSparkyGoddard
6peak pickingSparkyGoddard
7data analysisTALOSCornilescu, Delaglio and Bax
8refinementHADDOCK2.0Alexandre Bonvin
9data analysisHADDOCK2.0Alexandre Bonvin
10structure solutionUNIO08Torsten Herrmann
11data analysisNMR Structure ToolsLawrence J Clos