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Solution structure and dynamics of ADF from Toxoplasma gondii (TgADF)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM DTT; 1mM AEBSF protease inhibitor; 0.8mM [U-100% 15N] TgADF; 93% H2O/7% D2O 93% H2O/7% D2O 50 6.5 ambient 298 2 3D 1H-13C(aliphatic) NOESY 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM DTT; 1mM AEBSF protease inhibitor; 0.8mM [U-100% 13C; U-100% 15N] TgADF; 93% H2O/7% D2O 93% H2O/7% D2O 50 6.5 ambient 298 3 3D 1H-13C(aromatic) NOESY 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM DTT; 1mM AEBSF protease inhibitor; 0.8mM [U-100% 13C; U-100% 15N] TgADF; 100% D2O 100% D2O 50 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600 2 Bruker AVANCE 800
NMR Refinement Method Details Software CNS Water Refinement NMRPipe
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 data analysis CARA 1.8.4 Keller and Wuthrich 3 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 structure solution CYANA 3.0 Guntert, Mumenthaler and Wuthrich 5 refinement CNSSOLVE 1.2 Brunger, Adams, Clore, Gros, Nilges and Read