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HADDOCK calculated model of the complex of the resistance protein CalC and Calicheamicin-Gamma
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
2D 1H-15N HSQC
0.5 mM [U-100% 15N] CalC
95% H2O/5% D2O
150mM
7
ambient
303
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Varian
INOVA
800
NMR Refinement
Method
Details
Software
simulated annealing
THE STRUCTURE OF THE COMPLEX WAS DETERMINED WITH HADDOCK USING 26 AMBIGUOUS INTERACTION RESTRAINTS DERIVED FROM NMR CHEMICAL SHIFT PERTURBATION DATA AND MUTAGENESIS DATA. THE CHEMICAL SHIFT PERTURBATION DATA WERE OBTAINED BY ANALYSIS OF 1H-15N HSQC SPECTRA RECORDED WITH INCREASING RNA CONCENTRATIONS.
HADDOCK
NMR Ensemble Information
Conformer Selection Criteria
structures with the least restraint violations
Conformers Calculated Total Number
200
Conformers Submitted Total Number
4
Representative Model
1 (lowest energy)
Additional NMR Experimental Information
Details
Chemical Shift Perturbation
Computation: NMR Software
#
Classification
Version
Software Name
Author
1
structure solution
HADDOCK
2.1
Cyril Dominguez, Rolf Boelens and Alexandre M.J.J. Bonvin
2
refinement
HADDOCK
2.1
Cyril Dominguez, Rolf Boelens and Alexandre M.J.J. Bonvin