Conformational and membrane interactins studies of antimicrobial peptide Alyteserin-1C
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H TOCSY | 290 mM DHPC | 90% H2O/10% D2O | ambient | 307 | |||
| 2 | 2D 1H-1H NOESY | 290 mM DHPC | 90% H2O/10% D2O | ambient | 307 | |||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DRX | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | TopSpin | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (fewest violations) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | TopSpin | 2.0 | Bruker Biospin |
| 2 | processing | TopSpin | 2.0 | Bruker Biospin |
| 3 | data analysis | TopSpin | 2.0 | Bruker Biospin |
| 4 | peak picking | Sparky | 3.114 | Goddard |
| 5 | chemical shift assignment | Sparky | 3.114 | Goddard |
| 6 | structure solution | CYANA | 2.0 | Guntert, Mumenthaler and Wuthrich |
| 7 | refinement | SYBYL | 6.8.1 | Tripos |
