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Solution structure of the C-terminal domain of SilB from Cupriavidus metallidurans
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES 90% H2O/10% D2O 50 6.0 ambient 298 2 2D 1H-13C HSQC 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES 90% H2O/10% D2O 50 6.0 ambient 298 3 3D HNCO 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES 90% H2O/10% D2O 50 6.0 ambient 298 4 3D HNCACB 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES 90% H2O/10% D2O 50 6.0 ambient 298 5 3D HN(CO)CA 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES 90% H2O/10% D2O 50 6.0 ambient 298 6 3D HN(COCA)CB 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES 90% H2O/10% D2O 50 6.0 ambient 298 7 3D-intraHNCA 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES 90% H2O/10% D2O 50 6.0 ambient 298 8 3D-intraHN(CA)CB 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES 90% H2O/10% D2O 50 6.0 ambient 298 9 2D 1H-15N HADAMAC 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES 90% H2O/10% D2O 50 6.0 ambient 298 10 3D C(CO)NH 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES 90% H2O/10% D2O 50 6.0 ambient 298 11 3D 1H-15N NOESY 1 mM [U-100% 15N] protein, 50 mM MES 90% H2O/10% D2O 50 6.0 ambient 298 12 3D 1H-13C NOESY 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES 90% H2O/10% D2O 50 6.0 ambient 298 13 2D 1H-1H NOESY 1 mM [U-100% 15N] protein, 50 mM MES 100% D2O 50 6.0 ambient 298 14 T1 relaxation 1 mM [U-100% 15N] protein, 50 mM MES 90% H2O/10% D2O 50 6.0 ambient 298 15 T1rho relaxation 1 mM [U-100% 15N] protein, 50 mM MES 90% H2O/10% D2O 50 6.0 ambient 298 16 T2 relaxation 1 mM [U-100% 15N] protein, 50 mM MES 90% H2O/10% D2O 50 6.0 ambient 298 17 Heteronuclear NOE 1 mM [U-100% 15N] protein, 50 mM MES 90% H2O/10% D2O 50 6.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian VNMRS 800 2 Varian VNMRS 600 3 Varian VNMRS 600
NMR Refinement Method Details Software simulated annealing, simulated annealing, molecular dynamics CYANA (UNIO08), CNS, CNS, water refinement NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 1000 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 collection VnmrJ Varian 3 data analysis NMRView Johnson, One Moon Scientific 4 chemical shift assignment BATCH Lescop, Brutscher 5 peak picking UNIO08 Torsten Herrmann 6 chemical shift assignment UNIO08 Torsten Herrmann 7 structure solution UNIO08 Torsten Herrmann 8 structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read 9 data analysis curvefit AG Palmer 10 determination of dihedral angles TALOS Cornilescu, Delaglio and Bax 11 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read