The solution structure of the P2 C,the immunity repressor of the P2 bacteriophage
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
| 2 | 3D HNCA | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
| 3 | 3D HNCACB | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
| 4 | 3D CBCA(CO)NH | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
| 5 | 3D HNCO | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
| 6 | 3D HCCH-TOCSY | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
| 7 | 3D 1H-15N NOESY | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
| 8 | 3D 1H-13C NOESY | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
| 9 | 3D HBHA(CO)NH | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
| 10 | 3D HN(CO)CA | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 900 |
| 2 | Varian | INOVA | 800 |
| 3 | Bruker | AVANCE | 700 |
| 4 | Bruker | AVANCE | 500 |
| 5 | Varian | INOVA | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics, simulated annealing | CYANA | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | CYANA | 2.1 | Guntert, Braun and Wuthrich |
| 2 | chemical shift assignment | CYANA | 2.1 | Guntert, Braun and Wuthrich |
| 3 | processing | CYANA | 2.1 | Guntert, Braun and Wuthrich |
| 4 | chemical shift calculation | CYANA | 2.1 | Guntert, Braun and Wuthrich |
| 5 | geometry optimization | CYANA | 2.1 | Guntert, Braun and Wuthrich |
| 6 | structure solution | CYANA | 2.1 | Goddard |
| 7 | chemical shift assignment | CYANA | 2.1 | Goddard |
| 8 | processing | CYANA | 2.1 | Goddard |
| 9 | chemical shift calculation | CYANA | 2.1 | Goddard |
| 10 | geometry optimization | CYANA | 2.1 | Goddard |
| 11 | structure solution | CYANA | 2.1 | Bruker Biospin |
| 12 | chemical shift assignment | CYANA | 2.1 | Bruker Biospin |
| 13 | processing | CYANA | 2.1 | Bruker Biospin |
| 14 | chemical shift calculation | CYANA | 2.1 | Bruker Biospin |
| 15 | geometry optimization | CYANA | 2.1 | Bruker Biospin |
| 16 | structure solution | CYANA | 2.1 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
| 17 | chemical shift assignment | CYANA | 2.1 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
| 18 | processing | CYANA | 2.1 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
| 19 | chemical shift calculation | CYANA | 2.1 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
| 20 | geometry optimization | CYANA | 2.1 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
| 21 | refinement | CYANA | 2.1 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |














