Solution structure of peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with 1-{[(4-methylphenyl)thio]acetyl}piperidine
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D HNCA | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 95% H2O/5% D2O | 100 | 7 | 1 atm | 298 | |
| 2 | 3D HNCACB | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 95% H2O/5% D2O | 100 | 7 | 1 atm | 298 | |
| 3 | 3D HN(CO)CA | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 95% H2O/5% D2O | 100 | 7 | 1 atm | 298 | |
| 4 | 3D CBCA(CO)NH | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 95% H2O/5% D2O | 100 | 7 | 1 atm | 298 | |
| 5 | 2D 1H-15N HSQC | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 95% H2O/5% D2O | 100 | 7 | 1 atm | 298 | |
| 6 | 2D 1H-1H TOCSY | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 100% D2O | 100 | 7 | 1 atm | 298 | |
| 7 | 2D 1H-1H NOESY | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 100% D2O | 100 | 7 | 1 atm | 298 | |
| 8 | 2D 1H-15N HSQC | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 100% D2O | 100 | 7 | 1 atm | 298 | |
| 9 | 3D 1H-15N NOESY | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 95% H2O/5% D2O | 100 | 7 | 1 atm | 298 | |
| 10 | 3D 1H-15N TOCSY | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 95% H2O/5% D2O | 100 | 7 | 1 atm | 298 | |
| 11 | 3D HCCH-TOCSY | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 100% D2O | 100 | 7 | 1 atm | 298 | |
| 12 | 3D 1H-13C NOESY | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 100% D2O | 100 | 7 | 1 atm | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 500 |
| 2 | Bruker | AVANCE | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | NMRPipe | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 2 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
| 3 | chemical shift assignment | Analysis | CCPN | |
| 4 | refinement | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |














