2L2J
Solution NMR structure of the lower part of the R/G stem loop RNA
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 1.5 mM RNA (42-MER)-1 | 90% H2O/10% D2O | 20 | 6.2 | AMBIENT | 278 | |
2 | 3D 1H-13C NOESY | 1.5 mM RNA (42-MER)-2 | 100% D2O | 20 | 6.2 | AMBIENT | 278 | |
3 | 2D 1H-13C HSQC | 1.5 mM RNA (42-MER)-2 | 100% D2O | 20 | 6.2 | AMBIENT | 278 | |
4 | 2D 1H-1H TOCSY | 1.5 mM RNA (42-MER)-1 | 90% H2O/10% D2O | 20 | 6.2 | AMBIENT | 278 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX, AVANCE | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
TORSION ANGLE DYNAMICS, SIMULATED ANNEALING | AMBER |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | AMBER | CASE, D.A. ET AL. | |
2 | structure solution | TOPSPIN | 2.0 | Bruker Biospin |
3 | structure solution | SPARKY | Goddard | |
4 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich |