2L2G

Solution structure of Opossum Domain 11


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC5 % D2O, 20 mM sodium acetate, 0.1 mM EDTA, 100 uM sodium azide, 0.5-1 mM [U-98% 15N] IGF2R DOMAIN 1195% H2O/5% D2O05.5ambient298
22D 1H-15N HSQC5 mM D2O, 20 mM sodium acetate, 0.1 mM EDTA, 100 uM sodium azide, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R DOMAIN 1195% H2O/5% D2O05.5ambient298
32D 1H-13C HSQC5 mM D2O, 20 mM sodium acetate, 0.1 mM EDTA, 100 uM sodium azide, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R DOMAIN 1195% H2O/5% D2O05.5ambient298
43D CBCA(CO)NH5 mM D2O, 20 mM sodium acetate, 0.1 mM EDTA, 100 uM sodium azide, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R DOMAIN 1195% H2O/5% D2O05.5ambient298
53D C(CO)NH5 mM D2O, 20 mM sodium acetate, 0.1 mM EDTA, 100 uM sodium azide, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R DOMAIN 1195% H2O/5% D2O05.5ambient298
63D HNCO5 mM D2O, 20 mM sodium acetate, 0.1 mM EDTA, 100 uM sodium azide, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R DOMAIN 1195% H2O/5% D2O05.5ambient298
73D HNCA5 mM D2O, 20 mM sodium acetate, 0.1 mM EDTA, 100 uM sodium azide, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R DOMAIN 1195% H2O/5% D2O05.5ambient298
83D HNCACB5 mM D2O, 20 mM sodium acetate, 0.1 mM EDTA, 100 uM sodium azide, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R DOMAIN 1195% H2O/5% D2O05.5ambient298
93D HN(CO)CA5 mM D2O, 20 mM sodium acetate, 0.1 mM EDTA, 100 uM sodium azide, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R DOMAIN 1195% H2O/5% D2O05.5ambient298
103D HNHA5 mM D2O, 20 mM sodium acetate, 0.1 mM EDTA, 100 uM sodium azide, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R DOMAIN 1195% H2O/5% D2O05.5ambient298
113D 1H-15N NOESY5 mM D2O, 20 mM sodium acetate, 0.1 mM EDTA, 100 uM sodium azide, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R DOMAIN 1195% H2O/5% D2O05.5ambient298
123D 1H-15N TOCSY5 % D2O, 20 mM sodium acetate, 0.1 mM EDTA, 100 uM sodium azide, 0.5-1 mM [U-98% 15N] IGF2R DOMAIN 1195% H2O/5% D2O05.5ambient298
133D HCCH-TOCSY5 mM D2O, 20 mM sodium acetate, 0.1 mM EDTA, 100 uM sodium azide, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R DOMAIN 1195% H2O/5% D2O05.5ambient298
143D 1H-13C NOESY5 mM D2O, 20 mM sodium acetate, 0.1 mM EDTA, 100 uM sodium azide, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R DOMAIN 1195% H2O/5% D2O05.5ambient298
153D 1H-15N NOESY5 % D2O, 20 mM sodium acetate, 0.1 mM EDTA, 100 uM sodium azide, 0.5-1 mM [U-98% 15N] IGF2R DOMAIN 1195% H2O/5% D2O05.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
NMR Refinement
MethodDetailsSoftware
simulated annealing, simulated annealingARIA1.2 protocol. Cool_1 and cool_2 steps increased to 40K and cool_2, ARIA1.2 water refinement modified with RECOORD water refinement parametersVNMRJ
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMRJVarian
2structure solutionARIA1.2Linge, O'Donoghue and Nilges
3refinementARIA1.2Linge, O'Donoghue and Nilges
4processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5refinementCNS1.2Brunger, Adams, Clore, Gros, Nilges and Read
6structure solutionCNS1.2Brunger, Adams, Clore, Gros, Nilges and Read
7chemical shift assignmentCcpNMR2.13CCPN
8data analysisCcpNMR2.13CCPN
9peak pickingCcpNMR2.13CCPN
10refinementiCingr765Vuister, Doreleijers, Sousa da Silva
11geometry optimizationTALOSCornilescu, Delaglio and Bax