☰ Navigation Tabs
Structure-Functional Analysis of Mammalian MsrB2 protein
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 1-1.6 mM MsrB2ds, 5 mM DTT, 20 mM sodium phosphate, 25 mM sodium chloride 100% D2O 0.1 6.0 ambient 298 2 3D 1H-15N NOESY 1-1.6 mM [U-98% 13C; U-98% 15N] MsrB2ds, 5 mM DTT, 20 mM sodium phosphate, 25 mM sodium chloride 90% H2O/10% D2O 0.1 6.0 ambient 298 3 3D 1H-13C NOESY 1-1.6 mM [U-98% 13C; U-98% 15N] MsrB2ds, 5 mM DTT, 20 mM sodium phosphate, 25 mM sodium chloride 100% D2O 0.1 6.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing, molecular dynamics TALOS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 96 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 geometry optimization TALOS Cornilescu, Delaglio and Bax 2 refinement Amber 10 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm 3 collection XwinNMR Bruker Biospin 4 collection XEASY Bartels et al. 5 chemical shift assignment XEASY Bartels et al. 6 peak picking XEASY Bartels et al. 7 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich