2KUO

Structure and identification of ADP-ribose recognition motifs of APLF and role in the DNA damage response

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.5-0.8 mM [U-100% 13C; U-100% 15N] APLF Tandem ZF, 20 mM Bis-tris, 50 mM sodium chloride, 1 mM sodium azide, 0.05 mM zinc chloride	93% H2O/7% D2O	50	6.0	ambient	298
2	2D 1H-13C HSQC	0.5-0.8 mM [U-100% 13C; U-100% 15N] APLF Tandem ZF, 20 mM Bis-tris, 50 mM sodium chloride, 1 mM sodium azide, 0.05 mM zinc chloride	99% D2O	50	6.0	ambient	298
3	2D 1H-1H NOESY	0.5-0.8 mM [U-100% 13C; U-100% 15N] APLF Tandem ZF, 20 mM Bis-tris, 50 mM sodium chloride, 1 mM sodium azide, 0.05 mM zinc chloride	99% D2O	50	6.0	ambient	298
4	3D CBCA(CO)NH	0.5-0.8 mM [U-100% 13C; U-100% 15N] APLF Tandem ZF, 20 mM Bis-tris, 50 mM sodium chloride, 1 mM sodium azide, 0.05 mM zinc chloride	93% H2O/7% D2O	50	6.0	ambient	298
5	3D HNCACB	0.5-0.8 mM [U-100% 13C; U-100% 15N] APLF Tandem ZF, 20 mM Bis-tris, 50 mM sodium chloride, 1 mM sodium azide, 0.05 mM zinc chloride	93% H2O/7% D2O	50	6.0	ambient	298
6	3D HBHA(CO)NH	0.5-0.8 mM [U-100% 13C; U-100% 15N] APLF Tandem ZF, 20 mM Bis-tris, 50 mM sodium chloride, 1 mM sodium azide, 0.05 mM zinc chloride	93% H2O/7% D2O	50	6.0	ambient	298
7	3D H(CCO)NH	0.5-0.8 mM [U-100% 13C; U-100% 15N] APLF Tandem ZF, 20 mM Bis-tris, 50 mM sodium chloride, 1 mM sodium azide, 0.05 mM zinc chloride	93% H2O/7% D2O	50	6.0	ambient	298
8	3D C(CO)NH	0.5-0.8 mM [U-100% 13C; U-100% 15N] APLF Tandem ZF, 20 mM Bis-tris, 50 mM sodium chloride, 1 mM sodium azide, 0.05 mM zinc chloride	93% H2O/7% D2O	50	6.0	ambient	298
9	3D HCCH-TOCSY	0.5-0.8 mM [U-100% 13C; U-100% 15N] APLF Tandem ZF, 20 mM Bis-tris, 50 mM sodium chloride, 1 mM sodium azide, 0.05 mM zinc chloride	99% D2O	50	6.0	ambient	298
10	3D HCCH-COSY	0.5-0.8 mM [U-100% 13C; U-100% 15N] APLF Tandem ZF, 20 mM Bis-tris, 50 mM sodium chloride, 1 mM sodium azide, 0.05 mM zinc chloride	93% H2O/7% D2O	50	6.0	ambient	298
11	3D 1H-15N NOESY	0.5-0.8 mM [U-100% 13C; U-100% 15N] APLF Tandem ZF, 20 mM Bis-tris, 50 mM sodium chloride, 1 mM sodium azide, 0.05 mM zinc chloride	93% H2O/7% D2O	50	6.0	ambient	298
12	3D 1H-13C NOESY	0.5-0.8 mM [U-100% 13C; U-100% 15N] APLF Tandem ZF, 20 mM Bis-tris, 50 mM sodium chloride, 1 mM sodium azide, 0.05 mM zinc chloride	99% D2O	50	6.0	ambient	298
13	2D 1H-15N IPAP HSQC	0.5 mM [U-100% 15N] APLF Tandem ZF, 20 mM Bis-tris, 500 mM sodium chloride, 1 mM sodium azide, 0.05 mM zinc chloride, 10 mg/mL Pf1 phage	93% H2O/7% D2O	500	6.0	ambient	298
14	2D 1H-15N HSQC	0.1 mM [U-100% 15N] APLF Tandem ZF, 20 mM Bis-tris, 50 mM sodium chloride, 1 mM sodium azide, 0.05 mM zinc chloride	93% H2O/7% D2O	50	6.0	ambient	298
15	2D 1H-15N HSQC	0.1 mM [U-100% 15N] APLF Tandem ZF, 20 mM sodium phosphate, 150 mM potassium chloride, 1 mM sodium azide, 0.05 mM zinc chloride, 2 mM magnesium chloride	93% H2O/7% D2O	150	7.4	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
torsion angle dynamics, simulated annealing	CYANA, CNS	CYANA

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	CYANA	2.1	Guntert, P. et al.
2	refinement	CNS	1.1	Brunger, A. et al.
3	data analysis	MOLMOL	2k	Koradi, R. et al.
4	processing	NMRPipe		Delaglio, F. et al.
5	chemical shift based dihedral angle calculation	TALOS		Cornilescu, G. et al.
6	collection	TopSpin		Bruker Biospin
7	peak picking	XEASY		Bartels, C. et al.
8	chemical shift assignment	XEASY		Bartels, C. et al.
9	data analysis	XEASY		Bartels, C. et al.