2KRE

Solution structure of E4B/UFD2A U-Box domain


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_13C-SEPARATED_NOESY1-2 mM [U-100% 13C; U-100% 15N] E4B U-BOX DOMAIN-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 2 mM DTT-493% H2O/7% D2O50 mM NACL7.0AMBIENT298
23D_ 15N-SEPARATED_NOESY1-2 mM [U-100% 15N] E4B U-BOX DOMAIN-5, 20 mM sodium phosphate-6, 50 mM sodium chloride-7, 2 mM DTT-893% H2O/7% D2O50 mM NACL7.0AMBIENT298
32D 1H-1H NOESY2 mM E4B U-BOX DOMAIN-12, 20 mM sodium phosphate-13, 50 mM sodium chloride-14, 2 mM DTT-1593% H2O/7% D2O50 mM NACL7.0AMBIENT298
4HBOND-J1-2 mM [U-100% 13C; U-100% 15N] E4B U-BOX DOMAIN-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 2 mM DTT-493% H2O/7% D2O50 mM NACL7.0AMBIENT298
53J(NC(GAMMA))1-2 mM [U-100% 13C; U-100% 15N] E4B U-BOX DOMAIN-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 2 mM DTT-493% H2O/7% D2O50 mM NACL7.0AMBIENT298
6HBOND-J1-2 mM [U-100% 13C; U-100% 15N; U-80% 2H] E4B U-BOX DOMAIN-20, 20 mM sodium phosphate-21, 50 mM sodium chloride-22, 2 mM DTT-2393% H2O/7% D2O50 mM NACL7.0AMBIENT298
72D 1H-15N HSQC1-2 mM [U-100% 13C; U-100% 15N] E4B U-BOX DOMAIN-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 2 mM DTT-493% H2O/7% D2O50 mM NACL7.0AMBIENT298
82D 1H-15N HSQC1-2 mM [U-100% 15N] E4B U-BOX DOMAIN-5, 20 mM sodium phosphate-6, 50 mM sodium chloride-7, 2 mM DTT-893% H2O/7% D2O50 mM NACL7.0AMBIENT298
92D 1H-15N HSQC1-2 mM [U-100% 13C; U-100% 15N] E4B U-BOX DOMAIN-9, 20 mM sodium phosphate-10, 50 mM sodium chloride-11100% D2O50 mM NACL7.0AMBIENT298
102D 1H-13C HSQC1-2 mM [U-100% 13C; U-100% 15N] E4B U-BOX DOMAIN-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 2 mM DTT-493% H2O/7% D2O50 mM NACL7.0AMBIENT298
112D 1H-13C HSQC1-2 mM [U-100% 13C; U-100% 15N] E4B U-BOX DOMAIN-9, 20 mM sodium phosphate-10, 50 mM sodium chloride-11100% D2O50 mM NACL7.0AMBIENT298
122D 1H-13C HSQC1-2 mM [U-100% 13C; U-100% 15N; U-80% 2H] E4B U-BOX DOMAIN-20, 20 mM sodium phosphate-21, 50 mM sodium chloride-22, 2 mM DTT-2393% H2O/7% D2O50 mM NACL7.0AMBIENT298
132D 1H-1H NOESY1-2 mM E4B U-BOX DOMAIN-16, 20 mM sodium phosphate-17, 50 mM sodium chloride-18, 2 mM DTT-19100% D2O50 mM NACL7.0AMBIENT298
143D HNCO1-2 mM [U-100% 13C; U-100% 15N] E4B U-BOX DOMAIN-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 2 mM DTT-493% H2O/7% D2O50 mM NACL7.0AMBIENT298
153D HN(CA)CO1-2 mM [U-100% 13C; U-100% 15N] E4B U-BOX DOMAIN-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 2 mM DTT-493% H2O/7% D2O50 mM NACL7.0AMBIENT298
163D HNCA1-2 mM [U-100% 13C; U-100% 15N] E4B U-BOX DOMAIN-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 2 mM DTT-493% H2O/7% D2O50 mM NACL7.0AMBIENT298
173D HN(CO)CA1-2 mM [U-100% 13C; U-100% 15N] E4B U-BOX DOMAIN-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 2 mM DTT-493% H2O/7% D2O50 mM NACL7.0AMBIENT298
183D HNCACB1-2 mM [U-100% 13C; U-100% 15N] E4B U-BOX DOMAIN-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 2 mM DTT-493% H2O/7% D2O50 mM NACL7.0AMBIENT298
193D CBCA(CO)NH1-2 mM [U-100% 13C; U-100% 15N] E4B U-BOX DOMAIN-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 2 mM DTT-493% H2O/7% D2O50 mM NACL7.0AMBIENT298
203D HBHA(CO)NH1-2 mM [U-100% 13C; U-100% 15N] E4B U-BOX DOMAIN-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 2 mM DTT-493% H2O/7% D2O50 mM NACL7.0AMBIENT298
213D H(CCO)NH1-2 mM [U-100% 13C; U-100% 15N] E4B U-BOX DOMAIN-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 2 mM DTT-493% H2O/7% D2O50 mM NACL7.0AMBIENT298
223D C(CO)NH1-2 mM [U-100% 13C; U-100% 15N] E4B U-BOX DOMAIN-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 2 mM DTT-493% H2O/7% D2O50 mM NACL7.0AMBIENT298
233D HCCH-TOCSY1-2 mM [U-100% 13C; U-100% 15N] E4B U-BOX DOMAIN-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 2 mM DTT-493% H2O/7% D2O50 mM NACL7.0AMBIENT298
242D 1H-1H TOCSY1-2 mM E4B U-BOX DOMAIN-16, 20 mM sodium phosphate-17, 50 mM sodium chloride-18, 2 mM DTT-19100% D2O50 mM NACL7.0AMBIENT298
253D 1H-15N TOCSY1-2 mM [U-100% 15N] E4B U-BOX DOMAIN-5, 20 mM sodium phosphate-6, 50 mM sodium chloride-7, 2 mM DTT-893% H2O/7% D2O50 mM NACL7.0AMBIENT298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
2BrukerAVANCE500
NMR Refinement
MethodDetailsSoftware
DISTANCE GEOMETRY, SIMULATED ANNEALINGXPLOR-NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementXPLOR-NIH2.11.1SCHWIETERS & CLORE
2structure solutionCYANA2.1Guntert, Mumenthaler and Wuthrich