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solution structure of Helicobacter pylori SlyD
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-1 90% H2O/10% D2O 0.1 6.8 ambient 298 2 2D 1H-13C HSQC 1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-2 100% D2O 0.1 6.8 ambient 298 3 3D CBCA(CO)NH 1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-1 90% H2O/10% D2O 0.1 6.8 ambient 298 4 3D HNCACB 1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-1 90% H2O/10% D2O 0.1 6.8 ambient 298 5 3D HNCO 1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-1 90% H2O/10% D2O 0.1 6.8 ambient 298 6 3D HN(CA)CO 1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-1 90% H2O/10% D2O 0.1 6.8 ambient 298 7 3D C(CO)NH 1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-1 90% H2O/10% D2O 0.1 6.8 ambient 298 8 3D H(CCO)NH 1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-1 90% H2O/10% D2O 0.1 6.8 ambient 298 9 3D HNCA 1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-1 90% H2O/10% D2O 0.1 6.8 ambient 298 10 3D HCCH-TOCSY 1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-2 100% D2O 0.1 6.8 ambient 298 11 3D HCCH-COSY 1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-2 100% D2O 0.1 6.8 ambient 298 12 3D HBHA(CO)NH 1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-1 90% H2O/10% D2O 0.1 6.8 ambient 298 13 3D HNHA 1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-1 90% H2O/10% D2O 0.1 6.8 ambient 298 14 3D HN(CO)CA 1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-1 90% H2O/10% D2O 0.1 6.8 ambient 298 15 3D 1H-15N NOESY 1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-1 90% H2O/10% D2O 0.1 6.8 ambient 298 16 3D 1H-13C NOESY 1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-2 100% D2O 0.1 6.8 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software molecular dynamics, simulated annealing CYANA,_AMBER
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA,_AMBER Guntert, Mumenthaler and Wuthrich 2 refinement CYANA,_AMBER Guntert, Mumenthaler and Wuthrich 3 structure solution CYANA,_AMBER Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm 4 refinement CYANA,_AMBER Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm