2KQC

Second PBZ domain of human APLF protein


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.5-0.6 mM [U-98% 13C; U-98% 15N] APLF_363-45195% H2O/5% D2O0.46.0ambient300
22D 1H-15N HMQC long-range20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.5-0.6 mM [U-98% 13C; U-98% 15N] APLF_363-45195% H2O/5% D2O0.46.0ambient300
32D 1H-13C HSQC full-width20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.5-0.6 mM [U-98% 13C; U-98% 15N] APLF_363-45195% H2O/5% D2O0.46.0ambient300
42D 1H-13C HSQC aliphatic20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.5-0.6 mM [U-98% 13C; U-98% 15N] APLF_363-45195% H2O/5% D2O0.46.0ambient300
52D 1H-13C HSQC aromatic20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.5-0.6 mM [U-98% 13C; U-98% 15N] APLF_363-45195% H2O/5% D2O0.46.0ambient300
62D 1H-1H NOESY20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.5-0.6 mM [U-98% 13C; U-98% 15N] APLF_363-45195% H2O/5% D2O0.46.0ambient300
72D 1H-1H NOESY filtered20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.5-0.6 mM [U-98% 13C; U-98% 15N] APLF_363-45195% H2O/5% D2O0.46.0ambient300
83D CBCANH20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.5-0.6 mM [U-98% 13C; U-98% 15N] APLF_363-45195% H2O/5% D2O0.46.0ambient300
93D CBCA(CO)NH20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.5-0.6 mM [U-98% 13C; U-98% 15N] APLF_363-45195% H2O/5% D2O0.46.0ambient300
103D HBHANH20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.5-0.6 mM [U-98% 13C; U-98% 15N] APLF_363-45195% H2O/5% D2O0.46.0ambient300
113D HBHA(CO)NH20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.5-0.6 mM [U-98% 13C; U-98% 15N] APLF_363-45195% H2O/5% D2O0.46.0ambient300
123D HCCH-TOCSY20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.5-0.6 mM [U-98% 13C; U-98% 15N] APLF_363-45195% H2O/5% D2O0.46.0ambient300
133D HCCH-TOCSY20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.5-0.6 mM [U-98% 13C; U-98% 15N] APLF_363-45195% H2O/5% D2O0.46.0ambient300
143D 1H-15N NOESY20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.5-0.6 mM [U-98% 13C; U-98% 15N] APLF_363-45195% H2O/5% D2O0.46.0ambient300
153D 1H-13C NOESY20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.5-0.6 mM [U-98% 13C; U-98% 15N] APLF_363-45195% H2O/5% D2O0.46.0ambient300
163D HNHB20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.5-0.6 mM [U-98% 13C; U-98% 15N] APLF_363-45195% H2O/5% D2O0.46.0ambient300
173D HACAHB-COSY20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.5-0.6 mM [U-98% 13C; U-98% 15N] APLF_363-451100% D2O0.46.0ambient300
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2BrukerDMX600
3BrukerDRX500
NMR Refinement
MethodDetailsSoftware
simulated annealingXPLOR-NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number50
Conformers Submitted Total Number25
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsThe author states that NMR was carried out on a single fragment (363-451) containing both fingers F1 and F2 of APLF, but the structure calculations were carried out separately for each finger. This co-ordinate file includes residues 405-451 and contains F2 as well as the unstructured regions on either side.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionXPLOR-NIHSchwieters, Kuszewski, Tjandra and Clore
2refinementXPLOR-NIHSchwieters, Kuszewski, Tjandra and Clore