2KPY
Solution Structure of the major allergen of Artemisia vulgaris (Art v 1)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1 mM [U-99% 13C; U-99% 15N] Art v 1 protein | 90% H2O/10% D2O | 100 | 5.8 | AMBIENT | 298 | |
2 | 2D 1H-13C HSQC | 1 mM [U-99% 13C; U-99% 15N] Art v 1 protein | 90% H2O/10% D2O | 100 | 5.8 | AMBIENT | 298 | |
3 | 3D CBCA(CO)NH | 1 mM [U-99% 13C; U-99% 15N] Art v 1 protein | 90% H2O/10% D2O | 100 | 5.8 | AMBIENT | 298 | |
4 | 3D HNCA | 1 mM [U-99% 13C; U-99% 15N] Art v 1 protein | 90% H2O/10% D2O | 100 | 5.8 | AMBIENT | 298 | |
5 | 3D HNCACB | 1 mM [U-99% 13C; U-99% 15N] Art v 1 protein | 90% H2O/10% D2O | 100 | 5.8 | AMBIENT | 298 | |
6 | 3D HBHA(CO)NH | 1 mM [U-99% 13C; U-99% 15N] Art v 1 protein | 90% H2O/10% D2O | 100 | 5.8 | AMBIENT | 298 | |
7 | 3D HCCH-TOCSY | 1 mM [U-99% 13C; U-99% 15N] Art v 1 protein | 90% H2O/10% D2O | 100 | 5.8 | AMBIENT | 298 | |
8 | 3D H(CCO)NH | 1 mM [U-99% 13C; U-99% 15N] Art v 1 protein | 90% H2O/10% D2O | 100 | 5.8 | AMBIENT | 298 | |
9 | 3D 1H-15N NOESY | 1 mM [U-99% 13C; U-99% 15N] Art v 1 protein | 90% H2O/10% D2O | 100 | 5.8 | AMBIENT | 298 | |
10 | 3D 1H-13C NOESY | 1 mM [U-99% 13C; U-99% 15N] Art v 1 protein | 90% H2O/10% D2O | 100 | 5.8 | AMBIENT | 298 | |
11 | 3D 1H-15N TOCSY | 1 mM [U-99% 13C; U-99% 15N] Art v 1 protein | 90% H2O/10% D2O | 100 | 5.8 | AMBIENT | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics, TORSION ANGLE DYNAMICS | TopSpin |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 2.1 | Bruker Biospin |
2 | data analysis | TopSpin | 2.1 | Bruker Biospin |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | chemical shift assignment | CARA | 1.84 | Keller and Wuthrich |
5 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
6 | refinement | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |