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Solution structure and functional characterization of human plasminogen kringle 5
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 50 mM sodium phosphate, 11 mM AMCHA, 2.2 mM rK5 90% H2O/10% D2O 0.1 ambient 298 2 2D 1H-1H TOCSY 50 mM sodium phosphate, 11 mM AMCHA, 2.2 mM rK5 90% H2O/10% D2O 0.1 ambient 298 3 2D DQF-COSY 50 mM sodium phosphate, 11 mM AMCHA, 2.2 mM rK5 90% H2O/10% D2O 0.1 ambient 298 4 2D 1H-1H NOESY 50 mM sodium phosphate, 11 mM AMCHA, 2.2 mM rK5 90% H2O/10% D2O 0.1 ambient 298 5 3D HNHA 50 mM sodium phosphate, 11 mM AMCHA, 2.2 mM rK5 90% H2O/10% D2O 0.1 ambient 298 6 3D 1H-15N NOESY 50 mM sodium phosphate, 11 mM AMCHA, 2.2 mM rK5 90% H2O/10% D2O 0.1 ambient 298 7 3D 1H-15N TOCSY 50 mM sodium phosphate, 11 mM AMCHA, 2.2 mM rK5 90% H2O/10% D2O 0.1 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 500
NMR Refinement Method Details Software simulated annealing, molecular dynamics ARIA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment ARIA Linge, J.P. et al. 2 refinement ARIA Linge, J.P. et al. 3 structure solution ARIA Linge, J.P. et al.