NMR structure of the oxidized yeast TOR1 FATC domain bound to DPC micelles at 318K
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
| 2 | 2D 1H-13C HSQC | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
| 3 | 2D 1H-15N HSQC | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
| 4 | 2D 1H-13C HSQC | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
| 5 | 3D HNCA | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
| 6 | 3D HCCH-TOCSY | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
| 7 | 3D 1H-15N NOESY | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
| 8 | 3D 1H-13C NOESY | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
| 9 | 3D 1H-13C NOESY | 0.40 mM [U-13C; U-15N] y1fatc-2 | 150 | 6.5 | ambient | 318 | ||
| 10 | 3D HNHB | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
| 11 | 13C'-{13Cg} SED 1H-15N HSQC | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
| 12 | 15N-{13Cg} SED 1H-15N HSQC | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
| 13 | {15N} SED 1H-13C HSQC | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
| 14 | {13C'} SED 1H-13C HSQC | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
| 15 | 15N T1 | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
| 16 | 15N T2 | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
| 17 | {1H}-15N-NOE | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DRX | 600 |
| 2 | Bruker | DRX | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics, simulated annealing | X-PLOR NIH | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | X-PLOR NIH | 2.16.0 | Schwieters, Kuszewski, Tjandra and Clore |
| 2 | chemical shift assignment | NMRView | 5.2.2_01 | Johnson, One Moon Scientific |
| 3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 4 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 5 | structure analysis | ProcheckNMR | Laskowski and MacArthur | |
| 6 | structure visualization | MOLMOL | Koradi, Billeter and Wuthrich | |
| 7 | processing | XwinNMR | 3.5 | Bruker Biospin |
| 8 | analysis of 15n relaxation data | TENSOR2 | 2 | P. Dosset, D. Marion, M. Blackledge |
| 9 | refinement | X-PLOR NIH | 2.16.0 | Schwieters, Kuszewski, Tjandra and Clore |
