2KE9

NMR solution structure of the CASKIN SH3 domain


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.6 mM [U-98% 13C; U-98% 15N] caskinSH3-1, 10 mM D2O-2, 0.05 % sodium azide-3, 150 mM sodium chloride-4, 20 mM sodium phosphate-590% H2O/10% D2O0.157.8ambient293
22D 1H-13C HSQC0.6 mM [U-98% 13C; U-98% 15N] caskinSH3-1, 10 mM D2O-2, 0.05 % sodium azide-3, 150 mM sodium chloride-4, 20 mM sodium phosphate-590% H2O/10% D2O0.157.8ambient293
33D CBCA(CO)NH0.6 mM [U-98% 13C; U-98% 15N] caskinSH3-1, 10 mM D2O-2, 0.05 % sodium azide-3, 150 mM sodium chloride-4, 20 mM sodium phosphate-590% H2O/10% D2O0.157.8ambient293
43D C(CO)NH0.6 mM [U-98% 13C; U-98% 15N] caskinSH3-1, 10 mM D2O-2, 0.05 % sodium azide-3, 150 mM sodium chloride-4, 20 mM sodium phosphate-590% H2O/10% D2O0.157.8ambient293
53D HNCO0.6 mM [U-98% 13C; U-98% 15N] caskinSH3-1, 10 mM D2O-2, 0.05 % sodium azide-3, 150 mM sodium chloride-4, 20 mM sodium phosphate-590% H2O/10% D2O0.157.8ambient293
63D HNCACB0.6 mM [U-98% 13C; U-98% 15N] caskinSH3-1, 10 mM D2O-2, 0.05 % sodium azide-3, 150 mM sodium chloride-4, 20 mM sodium phosphate-590% H2O/10% D2O0.157.8ambient293
73D H(CCO)NH0.6 mM [U-98% 13C; U-98% 15N] caskinSH3-1, 10 mM D2O-2, 0.05 % sodium azide-3, 150 mM sodium chloride-4, 20 mM sodium phosphate-590% H2O/10% D2O0.157.8ambient293
83D 1H-15N NOESY0.6 mM [U-98% 13C; U-98% 15N] caskinSH3-1, 10 mM D2O-2, 0.05 % sodium azide-3, 150 mM sodium chloride-4, 20 mM sodium phosphate-590% H2O/10% D2O0.157.8ambient293
93D 1H-13C NOESY0.6 mM [U-98% 13C; U-98% 15N] caskinSH3-1, 10 mM D2O-2, 0.05 % sodium azide-3, 150 mM sodium chloride-4, 20 mM sodium phosphate-590% H2O/10% D2O0.157.8ambient293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianNMRS600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamics, water refinementCYANA 2.1 was used to determine 250 initial solutions of which 25 were selected as the initial ensemble. 5000 steps of torsion angle dynamics were performed, XPLOR-NIH 2.21 was used to further refine the 25 structure in explicit solvent. 2000 hot steps at 500 K were performed followed by 500 cool steps down to 100 K in 100 K steps.CYANA
NMR Ensemble Information
Conformer Selection Criteria
Conformers Calculated Total Number25
Conformers Submitted Total Number15
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCYANA2.1Guntert, P. et al.
2peak pickingNMRView5.1Johnson, B. et al.
3refinementX-PLOR NIH2.21Schwieters, C.D. et al.