2KCY | pdb_00002kcy

SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN S8E FROM Methanothermobacter thermautotrophicus, NORTHEASTSTRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET TR71D

SOLUTION NMR

---

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.94 mM [U-100% 13C; U-100% 15N] protein-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
2	2D 1H-15N HSQC	0.94 mM [U-100% 13C; U-100% 15N] protein-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
3	2D 1H-15N HSQC	0.94 mM [U-100% 13C; U-100% 15N] protein-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
4	3D 1H-15N NOESY	0.94 mM [U-100% 13C; U-100% 15N] protein-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
5	3D 1H-13C NOESY	0.94 mM [U-100% 13C; U-100% 15N] protein-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
6	3D 1H-13C NOESY	0.94 mM [U-100% 13C; U-100% 15N] protein-3	100% D2O	n.a.	6.5	ambient	298
7	3D HNCO	0.94 mM [U-100% 13C; U-100% 15N] protein-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
8	3D CBCA(CO)NH	0.94 mM [U-100% 13C; U-100% 15N] protein-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
9	3D HNCACB	0.94 mM [U-100% 13C; U-100% 15N] protein-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
10	3D C(CO)NH	0.94 mM [U-100% 13C; U-100% 15N] protein-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
11	3D HBHA(CO)NH	0.94 mM [U-100% 13C; U-100% 15N] protein-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
12	2D 1H-15N HSQC	1.0 mM [U-10% 13C; U-99% 15N] protein-2	95% H2O/5% D2O	n.a.	6.5	ambient	298
13	2D 1H-13C HSQC	1.0 mM [U-10% 13C; U-99% 15N] protein-2	95% H2O/5% D2O	n.a.	6.5	ambient	298
14	2D 1H-13C HSQC	0.94 mM [U-100% 13C; U-100% 15N] protein-3	100% D2O	n.a.	6.5	ambient	298
15	2D 1H-15N HSQC_TROSY	1.0 mM [U-10% 13C; U-99% 15N] protein-4	95% H2O/5% D2O	n.a.	6.5	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	800
2	GE	AVANCE	800
3	Varian	INOVA	600

NMR Refinement
Method	Details	Software
distance geometry, simulated annealing, molecular dynamics, torsion angle dynamics		CNS

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
2	structure solution	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
3	geometry optimization	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
4	refinement	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
5	structure solution	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
6	geometry optimization	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
7	refinement	AutoStructure		Huang, Tejero, Powers and Montelione
8	data analysis	AutoStructure		Huang, Tejero, Powers and Montelione
9	peak picking	AutoStructure		Huang, Tejero, Powers and Montelione
10	chemical shift assignment	XEASY		Bartels et al.
11	data analysis	XEASY		Bartels et al.
12	peak picking	XEASY		Bartels et al.
13	chemical shift assignment	AutoAssign		Zimmerman, Moseley, Kulikowski and Montelione
14	data analysis	AutoAssign		Zimmerman, Moseley, Kulikowski and Montelione
15	peak picking	AutoAssign		Zimmerman, Moseley, Kulikowski and Montelione
16	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
17	collection	TopSpin		Bruker Biospin
18	collection	VnmrJ		Varian
19	data analysis	PSVS		Bhattacharya and Montelione
20	refinement	PSVS		Bhattacharya and Montelione