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Solution structure of Apo-form YjaB from Escherichia coli
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 30mM TRIS, 100mM sodium chloride, 10mM DTT, 1 mM [U-13C; U-15N] YjaB protein 90% H2O/10% D2O 130 7.5 ambient 298 2 3D 1H-15N NOESY 30mM TRIS, 100mM sodium chloride, 10mM DTT, 1 mM [U-13C; U-15N] YjaB protein 90% H2O/10% D2O 130 7.5 ambient 298 3 3D 1H-13C NOESY 30mM TRIS, 100mM sodium chloride, 10mM DTT, 1 mM [U-13C; U-15N] YjaB protein 90% H2O/10% D2O 130 7.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software molecular dynamics NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 21 Representative Model 1 (minimized average)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe 2.1 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 data analysis NMRView 5 Johnson, One Moon Scientific 3 collection XwinNMR 3.5 Bruker Biospin 4 structure solution CYANA 2.0 Guntert, Mumenthaler and Wuthrich 5 refinement Amber 7 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo and Kollm