HADDOCK calculated model of the complex between the BRCT region of RFC p140 and dsDNA
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D NOESY | 0.3 mM [U-98% 13C; U-98% 15N] BRCT region RFC p140, 0.3 mM DNA strand, 0.3 mM DNA strand primer | 95% H2O/5% D2O | 5 | 7.5 | ambient | 298 | |
| 2 | f1 isotope filtered 2D NOESY | 0.3 mM [U-98% 13C; U-98% 15N] BRCT region RFC p140, 0.3 mM DNA strand, 0.3 mM DNA strand primer | 95% H2O/5% D2O | 5 | 7.5 | ambient | 298 | |
| 3 | f1,f2 isotope filtered 2D NOESY | 0.3 mM [U-98% 13C; U-98% 15N] BRCT region RFC p140, 0.3 mM DNA strand, 0.3 mM DNA strand primer | 95% H2O/5% D2O | 5 | 7.5 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DMX | 900 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| HADDOCK | The refinement method can be found in Dominguez C., Boelens R and Bonvin AMJJ., JACS 125, 1731 (2003) | HADDOCK |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | back calculated data agree with experimental NOESY spectrum |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 4 |
| Representative Model | 1 (fewest violations) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | HADDOCK | 2.0 | Dominguez C., Boelens R and Bonvin AMJJ., JACS 125, 1731 (2003) |
| 2 | refinement | HADDOCK | 2.0 | Dominguez C., Boelens R and Bonvin AMJJ., JACS 125, 1731 (2003) |
