2K6Q

LC3 p62 complex structure

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.8 mM [U-99% 13C; U-99% 15N] LC3, 1.2 mM p62 peptide, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
2	2D 1H-13C HSQC	0.8 mM [U-99% 13C; U-99% 15N] LC3, 1.2 mM p62 peptide, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
3	3D HCCH-TOCSY	0.8 mM [U-99% 13C; U-99% 15N] LC3, 1.2 mM p62 peptide, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
4	3D 1H-13C NOESY	0.8 mM [U-99% 13C; U-99% 15N] LC3, 1.2 mM p62 peptide, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
5	3D 1H-15N NOESY	0.8 mM [U-99% 13C; U-99% 15N] LC3, 1.2 mM p62 peptide, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
6	3D HNCA	0.8 mM [U-99% 13C; U-99% 15N] LC3, 1.2 mM p62 peptide, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
7	3D HN(CA)HA	0.8 mM [U-99% 13C; U-99% 15N] LC3, 1.2 mM p62 peptide, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
8	3D HBHA(CO)NH	0.8 mM [U-99% 13C; U-99% 15N] LC3, 1.2 mM p62 peptide, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
9	3D C(CO)NH	0.8 mM [U-99% 13C; U-99% 15N] LC3, 1.2 mM p62 peptide, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
10	3D HNCO	0.8 mM [U-99% 13C; U-99% 15N] LC3, 1.2 mM p62 peptide, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
11	3D CCH-TOCSY	0.8 mM [U-99% 13C; U-99% 15N] LC3, 1.2 mM p62 peptide, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
12	2D HbCbCgCdHd	0.8 mM [U-99% 13C; U-99% 15N] LC3, 1.2 mM p62 peptide, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
13	2D HbCbHcCdCeHe	0.8 mM [U-99% 13C; U-99% 15N] LC3, 1.2 mM p62 peptide, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
14	2D 1H-15N HSQC	0.8 mM [U-99% 13C; U-99% 15N] p62 peptide, 1.2 mM LC3, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
15	2D 1H-13C HSQC	0.8 mM [U-99% 13C; U-99% 15N] p62 peptide, 1.2 mM LC3, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
16	3D HNCO	0.8 mM [U-99% 13C; U-99% 15N] p62 peptide, 1.2 mM LC3, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
17	3D HNCA	0.8 mM [U-99% 13C; U-99% 15N] p62 peptide, 1.2 mM LC3, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
18	3D CBCA(CO)NH	0.8 mM [U-99% 13C; U-99% 15N] p62 peptide, 1.2 mM LC3, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
19	3D HBHA(CO)NH	0.8 mM [U-99% 13C; U-99% 15N] p62 peptide, 1.2 mM LC3, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
20	3D HCCH-TOCSY	0.8 mM [U-99% 13C; U-99% 15N] p62 peptide, 1.2 mM LC3, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
21	3D 1H-15N NOESY	0.8 mM [U-99% 13C; U-99% 15N] p62 peptide, 1.2 mM LC3, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298
22	3D 1H-13C NOESY	0.8 mM [U-99% 13C; U-99% 15N] p62 peptide, 1.2 mM LC3, 25 mM sodium phosphate, 100 mM sodium chloride	90% H2O/10% D2O	0.125	7.0	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	800
2	Varian	INOVA	600

NMR Refinement
Method	Details	Software
simulated annealing, torsion angle dynamics		VNMR

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	VNMR	6.1C	Varian
2	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	data analysis	TALOS		Cornilescu, Delaglio and Bax
4	chemical shift assignment	Sparky	3.110	Goddard
5	peak picking	Sparky	3.110	Goddard
6	refinement	Sparky	3.110	Goddard
7	structure solution	CYANA	2.1	Guntert, Mumenthaler and Wuthrich
8	refinement	CYANA	2.1	Guntert, Mumenthaler and Wuthrich