The domain features of the peripheral stalk subunit H of the methanogenic A1AO ATP synthase and the NMR solution structure of H1-47
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D 1H-15N NOESY | 0.5-1 mM [U-99% 13C; U-99% 15N] H1-47 subunit A ATP synthase, 0.1 % sodium azide | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
| 2 | 3D 1H-13C NOESY | 0.5-1 mM [U-99% 13C; U-99% 15N] H1-47 subunit A ATP synthase, 0.1 % sodium azide | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
| 3 | 3D CBCA(CO)NH | 0.5-1 mM [U-99% 13C; U-99% 15N] H1-47 subunit A ATP synthase, 0.1 % sodium azide | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
| 4 | 3D HNCACB | 0.5-1 mM [U-99% 13C; U-99% 15N] H1-47 subunit A ATP synthase, 0.1 % sodium azide | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
| 5 | 3D C(CO)NH | 0.5-1 mM [U-99% 13C; U-99% 15N] H1-47 subunit A ATP synthase, 0.1 % sodium azide | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
| 6 | 3D H(CCO)NH | 0.5-1 mM [U-99% 13C; U-99% 15N] H1-47 subunit A ATP synthase, 0.1 % sodium azide | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
| 7 | 2D 1H-15N HSQC | 0.5-1 mM [U-99% 13C; U-99% 15N] H1-47 subunit A ATP synthase, 0.1 % sodium azide | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
| 8 | 2D 1H-13C HSQC | 0.5-1 mM [U-99% 13C; U-99% 15N] H1-47 subunit A ATP synthase, 0.1 % sodium azide | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | Sparky | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the least restraint violations |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | peak picking | Sparky | 3.113 | Goddard, T.D. et al. |
| 2 | chemical shift assignment | Sparky | 3.113 | Goddard, T.D. et al. |
| 3 | structure solution | CYANA | 3.0 | Guntert, P. et al. |
| 4 | collection | TopSpin | 1.3 | Bruker Biospin |
| 5 | processing | TopSpin | 1.3 | Bruker Biospin |
| 6 | torsional angle calculation | TALOS | Cornilescu, G. et al. | |
| 7 | refinement | CYANA | 3.0 | Guntert, P. et al. |














