2K6B

Solution structure of 1-112 fragment of human programmed cell death 5 protein

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1.0-2.0 mM [U-13C; U-15N] pdcd5, 100 mM [U-2H] acetic acid, 100 mM sodium chloride, 0.01 % DSS, 0.01 % sodium azide	90% H2O/10% D2O	0.1	4.7	ambient	308
2	2D 1H-13C HSQC	1.0-2.0 mM [U-13C; U-15N] pdcd5, 100 mM [U-2H] acetic acid, 100 mM sodium chloride, 0.01 % DSS, 0.01 % sodium azide	90% H2O/10% D2O	0.1	4.7	ambient	308
3	3D CBCA(CO)NH	1.0-2.0 mM [U-13C; U-15N] pdcd5, 100 mM [U-2H] acetic acid, 100 mM sodium chloride, 0.01 % DSS, 0.01 % sodium azide	90% H2O/10% D2O	0.1	4.7	ambient	308
4	3D HNCACB	1.0-2.0 mM [U-13C; U-15N] pdcd5, 100 mM [U-2H] acetic acid, 100 mM sodium chloride, 0.01 % DSS, 0.01 % sodium azide	90% H2O/10% D2O	0.1	4.7	ambient	308
5	3D HNCA	1.0-2.0 mM [U-13C; U-15N] pdcd5, 100 mM [U-2H] acetic acid, 100 mM sodium chloride, 0.01 % DSS, 0.01 % sodium azide	90% H2O/10% D2O	0.1	4.7	ambient	308
6	3D HNCO	1.0-2.0 mM [U-13C; U-15N] pdcd5, 100 mM [U-2H] acetic acid, 100 mM sodium chloride, 0.01 % DSS, 0.01 % sodium azide	90% H2O/10% D2O	0.1	4.7	ambient	308
7	3D H(CCO)NH	1.0-2.0 mM [U-13C; U-15N] pdcd5, 100 mM [U-2H] acetic acid, 100 mM sodium chloride, 0.01 % DSS, 0.01 % sodium azide	90% H2O/10% D2O	0.1	4.7	ambient	308
8	3D 1H-15N TOCSY	1.0-2.0 mM [U-13C; U-15N] pdcd5, 100 mM [U-2H] acetic acid, 100 mM sodium chloride, 0.01 % DSS, 0.01 % sodium azide	90% H2O/10% D2O	0.1	4.7	ambient	308
9	3D 1H-15N NOESY	1.0-2.0 mM [U-13C; U-15N] pdcd5, 100 mM [U-2H] acetic acid, 100 mM sodium chloride, 0.01 % DSS, 0.01 % sodium azide	90% H2O/10% D2O	0.1	4.7	ambient	308
10	3D HCCH-TOCSY	1.0-2.0 mM [U-13C] pdcd5, 100 mM [U-2H] acetic acid, 100 mM sodium chloride, 0.01 % DSS, 0.01 % sodium azide	100% D2O	0.1	4.7	ambient	308
11	3D HN(CA)CO	1.0-2.0 mM [U-13C; U-15N] pdcd5, 100 mM [U-2H] acetic acid, 100 mM sodium chloride, 0.01 % DSS, 0.01 % sodium azide	90% H2O/10% D2O	0.1	4.7	ambient	308
12	3D HCCH-COSY	1.0-2.0 mM [U-13C] pdcd5, 100 mM [U-2H] acetic acid, 100 mM sodium chloride, 0.01 % DSS, 0.01 % sodium azide	100% D2O	0.1	4.7	ambient	308
13	3D 1H-13C NOESY	1.0-2.0 mM [U-13C] pdcd5, 100 mM [U-2H] acetic acid, 100 mM sodium chloride, 0.01 % DSS, 0.01 % sodium azide	100% D2O	0.1	4.7	ambient	308

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	DMX	600

NMR Refinement
Method	Details	Software
molecular dynamics, simulated annealing		XwinNMR

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	XwinNMR		Bruker Biospin
2	processing	Felix		Accelrys Software Inc.
3	data analysis	Felix		Accelrys Software Inc.
4	structure solution	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
5	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read