2K57 | pdb_00002k57

Solution NMR Structure of Putative Lipoprotein from Pseudomonas syringae Gene Locus PSPTO2350. Northeast Structural Genomics Target PsR76A.

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1.07 MM [U-100% 13C 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O; 1.07 MM [5% 13C; U-100% 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O		0.1	6.5	AMBIENT	298
2	2D 1H-13C HSQC	1.07 MM [U-100% 13C 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O; 1.07 MM [5% 13C; U-100% 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O		0.1	6.5	AMBIENT	298
3	2D 1H-13C HSQC CT ARO	1.07 MM [U-100% 13C 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O; 1.07 MM [5% 13C; U-100% 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O		0.1	6.5	AMBIENT	298
4	3D HNCO	1.07 MM [U-100% 13C 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O; 1.07 MM [5% 13C; U-100% 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O		0.1	6.5	AMBIENT	298
5	3D CBCA(CO)NH	1.07 MM [U-100% 13C 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O; 1.07 MM [5% 13C; U-100% 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O		0.1	6.5	AMBIENT	298
6	3D HNCACB	1.07 MM [U-100% 13C 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O; 1.07 MM [5% 13C; U-100% 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O		0.1	6.5	AMBIENT	298
7	3D HN(CA)CO	1.07 MM [U-100% 13C 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O; 1.07 MM [5% 13C; U-100% 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O		0.1	6.5	AMBIENT	298
8	3D 1H-13C -15N SIM NOESY	1.07 MM [U-100% 13C 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O; 1.07 MM [5% 13C; U-100% 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O		0.1	6.5	AMBIENT	298
9	N15-T1	1.07 MM [U-100% 13C 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O; 1.07 MM [5% 13C; U-100% 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O		0.1	6.5	AMBIENT	298
10	N15- T2(CPMG)	1.07 MM [U-100% 13C 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O; 1.07 MM [5% 13C; U-100% 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O		0.1	6.5	AMBIENT	298
11	3J NHHA	1.07 MM [U-100% 13C 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O; 1.07 MM [5% 13C; U-100% 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O		0.1	6.5	AMBIENT	298
12	3D HCCH-COSY	1.07 MM [U-100% 13C 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O; 1.07 MM [5% 13C; U-100% 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O		0.1	6.5	AMBIENT	298
13	3D HCCH-TOCSY	1.07 MM [U-100% 13C 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O; 1.07 MM [5% 13C; U-100% 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O		0.1	6.5	AMBIENT	298
14	3D CCH- TOCSY	1.07 MM [U-100% 13C 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O; 1.07 MM [5% 13C; U-100% 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O		0.1	6.5	AMBIENT	298
15	3D CC(CO)NH-TOCSY	1.07 MM [U-100% 13C 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O; 1.07 MM [5% 13C; U-100% 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O		0.1	6.5	AMBIENT	298
16	2D 1H	1.07 MM [U-100% 13C 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O; 1.07 MM [5% 13C; U-100% 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O		0.1	6.5	AMBIENT	298
17	15N HETNOE	1.07 MM [U-100% 13C 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O; 1.07 MM [5% 13C; U-100% 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O		0.1	6.5	AMBIENT	298
18	2D 1H-13C HSQC STEREO	1.07 MM [U-100% 13C 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O; 1.07 MM [5% 13C; U-100% 15N] PSR76A, 50 UM DSS, 10 MM DTT, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 20 MM MES, 5 MM CALCIUM CHLORIDE, 90% H2O/10% D2O		0.1	6.5	AMBIENT	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600
2	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
torsion angle dynamics		CNS

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (n/a)

Additional NMR Experimental Information
Details	MONOMER BY GEL FILTRATION CHROMATOGRAPHY/LIGHT SCATTERING. STRUCTURE DETERMINED BY TRIPLE RESONANCE NMR SPECTROSCOPY. NOESY ASSIGNMENTS BY CYANA2.1. 20 OF 100 STRUCTURES LOWEST TARGET FUNCTION SELECTED WITH CYANA2.1. SELECTED MODELS ARE FURTHER REFINED USING CNS IN EXPLICIT WATER SHELL (NILGES PROTOCOL BACKBONE 98.2%, SIDECHAIN 91.0%, AROMATIC (SC) 55.6%, VL METHYL STEREOSPECIFIC 100%, UNAMBIGUOS SIDECHAIN NH2 100%. STRUCTURE BASED ON 1027 NOE, 133 DIHE. MAX NOE VIOLATION: 0.14 A (1MODEL); MAX DIHE VIOLATION: 3.1 DEG. 2 TOTAL CLOSE ORDERED RESIDUES RANGES: 1-71 FOR [S(PHI)+S(PSI)] > 1.8. SECONDARY STRUCTURE - BETA STRANDS: (8-17, 20-26, 29-33, 51- 60, 65-70). RMSD 0.4 BACKBONE, 0.7 ALL HEAVY ATOMS. RAMA. CLASH: 11.98/-0.53 (RAW/Z). RPF SCORES ALL ASSIGNED RESIDUES PRECISION: 0.92, F-MEASURE: 0.95, DP-SCORE: 0.799.

Additional NMR Experimental Information

Details

MONOMER BY GEL FILTRATION CHROMATOGRAPHY/LIGHT SCATTERING. STRUCTURE DETERMINED BY TRIPLE RESONANCE NMR SPECTROSCOPY. NOESY ASSIGNMENTS BY CYANA2.1. 20 OF 100 STRUCTURES LOWEST TARGET FUNCTION SELECTED WITH CYANA2.1. SELECTED MODELS ARE FURTHER REFINED USING CNS IN EXPLICIT WATER SHELL (NILGES PROTOCOL BACKBONE 98.2%, SIDECHAIN 91.0%, AROMATIC (SC) 55.6%, VL METHYL STEREOSPECIFIC 100%, UNAMBIGUOS SIDECHAIN NH2 100%. STRUCTURE BASED ON 1027 NOE, 133 DIHE. MAX NOE VIOLATION: 0.14 A (1MODEL); MAX DIHE VIOLATION: 3.1 DEG. 2 TOTAL CLOSE ORDERED RESIDUES RANGES: 1-71 FOR [S(PHI)+S(PSI)] > 1.8. SECONDARY STRUCTURE - BETA STRANDS: (8-17, 20-26, 29-33, 51- 60, 65-70). RMSD 0.4 BACKBONE, 0.7 ALL HEAVY ATOMS. RAMA. CLASH: 11.98/-0.53 (RAW/Z). RPF SCORES ALL ASSIGNED RESIDUES PRECISION: 0.92, F-MEASURE: 0.95, DP-SCORE: 0.799.

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS	1.1	BRUNGER, ADAMS, CLORE, GROS, NILGES
2	structure solution	CYANA	2.1
3	structure solution	AutoAssign	2.4.0
4	structure solution	NMRPipe
5	structure solution	TopSpin	2.1
6	structure solution	Sparky	3.113
7	structure solution	TALOS
8	structure solution	RPF(AUTOSTRUCTURE)	2.2.1
9	structure solution	MOLMOL
10	structure solution	PSVS
11	structure solution	PdbStat	5.0
12	structure solution	MolProbity
13	structure solution	PROCHECK

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 2K57 | pdb_00002k57

Solution NMR Structure of Putative Lipoprotein from Pseudomonas syringae Gene Locus PSPTO2350. Northeast Structural Genomics Target PsR76A.

2K57 | pdb_00002k57