2JZV | pdb_00002jzv

Solution structure of S. aureus PrsA-PPIase

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
2	2D 1H-13C HSQC	1 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
3	3D CBCA(CO)NH	1 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
4	3D C(CO)NH	1 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
5	3D HNCO	1 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
6	3D HNCACB	1 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
7	3D HN(CO)CA	1 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
8	3D H(CCO)NH	1 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
9	3D HCCH-TOCSY	1 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
10	3D HCCH-COSY	1 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
11	3D 1H-15N NOESY	1 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
12	3D 1H-13C NOESY	1 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
13	3D iHNCA	1 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
14	3D 1H-13C NOESY (AROM)	1 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
15	(H )C (C C )H	1 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
16	(H )C (C C C )H	1 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
17	J(CN) intensity modulated constant time 13C-HSQC	1 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
18	3D R1 resolved 1H-15N-HSQC	0.3 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
19	3D R2 resolved 1H-15N-HSQC	0.3 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298
20	exchange rate resolved 1H-15N-HSQC	0.3 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA	92% H2O/8% D2O	20	6.8	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	800
2	Varian	INOVA	600
3	Varian	INOVA	500
4	Bruker	DRX	500

NMR Refinement
Method	Details	Software
molecular dynamics	Structures were refined with molecular dynamics using Born implicit solvent model in AMBER 8.0	VNMR

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	400
Conformers Submitted Total Number	25
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	VNMR	6.1C	Varian
2	processing	VNMR	6.1C	Varian
3	chemical shift assignment	Sparky	3.110	Goddard
4	data analysis	Sparky	3.110	Goddard
5	peak picking	Sparky	3.110	Goddard
6	data analysis	TALOS	2003.027.13.05	Cornilescu, Delaglio and Bax
7	structure solution	CYANA	2.1	Guntert, Mumenthaler and Wuthrich
8	refinement	Amber	8.0	Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm
9	quality control	ProcheckNMR		Laskowski and MacArthur
10	quality control	What_check		Vriend