2JVV
Solution Structure of E. coli NusG carboxyterminal domain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.45 mM [U-95% 13C; U-95% 15N] NusG, 10 mM potassium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 6.4 | ambient | 298 | ||
2 | 2D 1H-13C HSQC | 0.45 mM [U-95% 13C; U-95% 15N] NusG, 10 mM potassium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 6.4 | ambient | 298 | ||
3 | 3D HNCO | 0.45 mM [U-95% 13C; U-95% 15N] NusG, 10 mM potassium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 6.4 | ambient | 298 | ||
4 | 3D HNCA | 0.45 mM [U-95% 13C; U-95% 15N] NusG, 10 mM potassium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 6.4 | ambient | 298 | ||
5 | 3D CBCA(CO)NH | 0.45 mM [U-95% 13C; U-95% 15N] NusG, 10 mM potassium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 6.4 | ambient | 298 | ||
6 | 3D HNCACB | 0.45 mM [U-95% 13C; U-95% 15N] NusG, 10 mM potassium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 6.4 | ambient | 298 | ||
7 | 3D HBHA(CO)NH | 0.45 mM [U-95% 13C; U-95% 15N] NusG, 10 mM potassium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 6.4 | ambient | 298 | ||
8 | 3D HCCH-TOCSY | 0.45 mM [U-95% 13C; U-95% 15N] NusG, 10 mM potassium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 6.4 | ambient | 298 | ||
9 | 3D 1H-15N NOESY | 0.45 mM [U-95% 13C; U-95% 15N] NusG, 10 mM potassium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 6.4 | ambient | 298 | ||
10 | 3D 1H-13C NOESY | 0.45 mM [U-95% 13C; U-95% 15N] NusG, 10 mM potassium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 6.4 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | Avance | 800 |
2 | Bruker | Avance | 900 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | NMRView |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 120 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | The protein shows aggregation via the aminoterminal domain, and the resulting line broading of the signals of the aminoterminal domain did not allow a structure determination of the aminoterminal domain using the full length protein. Becuase of flexible linked domains the carboxyterminal domain showed sufficient signals to determine the structure of this domain using the full length protein. Only the carboxyterminal domain (res. 124-181) gave interpretable NMR data for assignment and structure determination. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
2 | structure solution | X-PLOR_NIH | 1.2.1 | Schwieters, Kuszewski, Tjandra and Clore |
3 | refinement | X-PLOR_NIH | 1.2.1 | Schwieters, Kuszewski, Tjandra and Clore |